Browse Element(s) Details


OsAffx.24955.1.S1_s_at

Description tigr:9631.m00284
TID=OsAffx.24955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0373011/11regulatory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03690Os.53684.1.A1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690OsAffx.12724.1.S1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690Os.10405.1.S1_at1/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03730OsAffx.24955.1.S1_s_at11/113+1645808..1647611regulatory protein, putative, expressed
LOC_Os03g03740NANA3+1648147..1648488retrotransposon protein, putative, unclassified
LOC_Os03g03750OsAffx.12725.1.S1_at8/113+1649370..1649778hypothetical protein
LOC_Os03g03760OsAffx.12726.1.S1_at11/113+1651176..1656154myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g03770Os.4335.1.S1_at10/113+1663864..1667883NADH-ubiquinone oxidoreductase B18 subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24955.1.S1_s_at--575--7671Chr03:1646844..1646868 (25 bp)
GGCGTTCTACCGGTACTGGTACGCG
LOC_Os03g03730
OsAffx.24955.1.S1_s_at--399--8371Chr03:1646741..1646765 (25 bp)
GGCGTCAGGATCAGGTTCCTCAGCA
LOC_Os03g03730
OsAffx.24955.1.S1_s_at--77--1511Chr03:1646692..1646716 (25 bp)
AGCACGGCCGGAATCTGAGCACGGT
LOC_Os03g03730
OsAffx.24955.1.S1_s_at--777--471Chr03:1646680..1646704 (25 bp)
ATCTGAGCACGGTGTGCACCATGCA
LOC_Os03g03730
OsAffx.24955.1.S1_s_at--192--3791Chr03:1646615..1646639 (25 bp)
CTCGGGCTCATGCTCCAGGACTGGA
LOC_Os03g03730
OsAffx.24955.1.S1_s_at--791--1771Chr03:1646563..1646587 (25 bp)
ACCGGCATTCTGTCACCTGGAGTGT
LOC_Os03g03730
OsAffx.24955.1.S1_s_at--173--8031Chr03:1646548..1646569 (22 bp)
GGAGTGTGCCTAGGAATTGCAGTAT
LOC_Os03g03730
OsAffx.24955.1.S1_s_at--1131--6811Chr03:1646357..1646381 (25 bp)
GTTTAGAGCCAACACTTGCTGTTGT
LOC_Os03g03730
OsAffx.24955.1.S1_s_at--23--2191Chr03:1646346..1646370 (25 bp)
ACACTTGCTGTTGTCTGTACCATAG
LOC_Os03g03730
OsAffx.24955.1.S1_s_at--5--7191Chr03:1646334..1646358 (25 bp)
GTCTGTACCATAGATGAGATGCTGA
LOC_Os03g03730
OsAffx.24955.1.S1_s_at--133--1291Chr03:1646318..1646342 (25 bp)
AGATGCTGACTGGAACAAATGAACA
LOC_Os03g03730
Target Sequence 
GGCGTTCTACCGGTACTGGTACGCGGCGAGGGAGAGGCACCCGGGTCTCCACGACCAGGACGTGCTCAACCTCATCAAGC
GCGACGCCTACGTCGCCCGCCTCGGCGTCAGGATCAGGTTCCTCAGCACCGACCTCTTCGCCGGCCTCTGCGAGCACGGC
CGGAATCTGAGCACGGTGTGCACCATGCACGCCAACTGCTGCGTCGGCCTCCGCCGGAAGGTCGACGACCTCGGGCTCAT
GCTCCAGGACTGGAGGAGGTTCATGGCGACGCCCGGGAGTGACCGGCATTCTGTCACCTGGAGTGTGCCTAGGAATTGCA
GTATGAAGAAACTGGGGCGTTTAGAGCCAACACTTGCTGTTGTCTGTACCATAGATGAGATGCTGACTGGAACAAATGAA
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24955.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis