Browse Element(s) Details


OsAffx.24956.1.S1_at

Description tigr:9631.m00296
TID=OsAffx.24956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GATA zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0385011/11GATA zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03790Os.49527.1.S1_at11/113+1684396..1686679acyl-activating enzyme 11, putative, expressed
LOC_Os03g03800NANA3+1689651..1691275hypothetical protein
LOC_Os03g03810Os.10652.1.S1_at11/113+1692927..1693542Gamma-thionin homolog PPT precursor, putative, expressed
LOC_Os03g03820Os.4338.1.S1_at11/113+1694780..1698023Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os03g03830Os.4339.1.S1_at10/113+1698415..1706250EF hand family protein, expressed
LOC_Os03g03840NANA3+1708856..1709056hypothetical protein
LOC_Os03g03850OsAffx.24956.1.S1_at11/113+1711641..1712456GATA zinc finger family protein
LOC_Os03g03860Os.50118.1.S1_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.2.S1_x_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.1.S1_a_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_x_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.30136.1.S1_at2/113+1715643..1727032expressed protein
LOC_Os03g03870NANA3+1729929..1735913Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24956.1.S1_at--124--3491Chr03:1712205..1712229 (25 bp)
CAGGAGCGAGGAGCACATGCACGCC
LOC_Os03g03850
OsAffx.24956.1.S1_at--430--3931Chr03:1712172..1712196 (25 bp)
CGGCGGGCTGGACTTGCAGAGAGCA
LOC_Os03g03850
OsAffx.24956.1.S1_at--182--7231Chr03:1712108..1712132 (25 bp)
GTCGACGACGTTCCGTGGCTCCAAG
LOC_Os03g03850
OsAffx.24956.1.S1_at--454--8491Chr03:1712093..1712117 (25 bp)
TGGCTCCAAGCTTCGGCTGTGGCGA
LOC_Os03g03850
OsAffx.24956.1.S1_at--735--4131Chr03:1712046..1712070 (25 bp)
CGCCGTACGCAAGAGGGTCTGGTCA
LOC_Os03g03850
OsAffx.24956.1.S1_at--681--2791Chr03:1712036..1712060 (25 bp)
AAGAGGGTCTGGTCACTGGTATCCC
LOC_Os03g03850
OsAffx.24956.1.S1_at--716--2191Chr03:1711978..1712002 (25 bp)
ACAACAGCCGCGACGAAGTTTCCAG
LOC_Os03g03850
OsAffx.24956.1.S1_at--943--8011Chr03:1711931..1711955 (25 bp)
GGAGGAGAACACTGCTCGCGCCCCG
LOC_Os03g03850
OsAffx.24956.1.S1_at--297--7311Chr03:1711797..1711821 (25 bp)
GTGCGGCATCCGGTACAGGATTGAC
LOC_Os03g03850
OsAffx.24956.1.S1_at--748--9271Chr03:1711789..1711813 (25 bp)
TCCGGTACAGGATTGACCACCTGCT
LOC_Os03g03850
OsAffx.24956.1.S1_at--619--4911Chr03:1711735..1711759 (25 bp)
GCTTCGGGAGCGACGGGTACTCCAA
LOC_Os03g03850
Target Sequence 
CAGGAGCGAGGAGCACATGCACGCCGACGTTGGCGGCGGGCTGGACTTGCAGAGAGCAGTAGGCGGCGGCGATGAGAAGG
CGGGCACGCCGAGCACCGTCGACGACGTTCCGTGGCTCCAAGCTTCGGCTGTGGCGAGGAAGCCGCGCCGCGCACCCGCC
GCCGTACGCAAGAGGGTCTGGTCACTGGTATCCCCCCAGCTGGCCACCGCCGCCGCCGCCGCCGTCGACAACAGCCGCGA
CGAAGTTTCCAGCGGCGGCGGCGGCGGAGGAGAAGGAGGAGAACACTGCTCGCGCCCCGCCAAGCGGCGGCGCAAATGCG
GCGAGGAGAAGAGGTGCGGCCACTGCCAGACGACGGAGACGCCGCAGTGGCGGGTGGGGCCGGACGGGCCGAGCACGCTG
TGCAACGCGTGCGGCATCCGGTACAGGATTGACCACCTGCTGCCGGAGTACCGGCCGTCGACGAGCCCCGGCTTCGGGAG
CGACGGGTACTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis