Browse Element(s) Details


OsAffx.24970.1.S1_at

Description tigr:9631.m00430
TID=OsAffx.24970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0510011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05060Os.53691.1.S1_at11/113+2445571..2447451Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05070Os.50602.1.S1_at11/113+2450381..2452132Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05080OsAffx.12735.1.S1_x_at11/113+2453439..2453983hypothetical protein
LOC_Os03g05090NANA3+2458525..2458992transposon protein, putative, unclassified
LOC_Os03g05100OsAffx.24970.1.S1_at11/113+2461631..2462449hypothetical protein
LOC_Os03g05110Os.6350.1.S1_at11/113+2466031..2468591Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein
LOC_Os03g05130NANA3+2473495..2473893hypothetical protein
LOC_Os03g05140OsAffx.3137.1.S1_x_at11/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05140Os.50672.1.S2_x_at1/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05150OsAffx.24973.1.S1_at11/113+2478314..2481211hypothetical protein
LOC_Os03g05160OsAffx.24974.1.S1_x_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05160OsAffx.24974.1.S1_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05170OsAffx.24975.1.S1_at11/113+2486752..2487448hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24970.1.S1_at--927--2051Chr03:2461857..2461881 (25 bp)
ACTTCCGTCTGCGTCTGATTAATTG
LOC_Os03g05100
OsAffx.24970.1.S1_at--245--2331Chr03:2461885..2461909 (25 bp)
AAAGTCGTACTGTTGTGGCTATGAG
LOC_Os03g05100
OsAffx.24970.1.S1_at--739--971Chr03:2461959..2461983 (25 bp)
AGGAGATCGAACACCGCCGGCTGGA
LOC_Os03g05100
OsAffx.24970.1.S1_at--698--6191Chr03:2461982..2462006 (25 bp)
GAGGAAGATGGTCGCATTCCTGCCT
LOC_Os03g05100
OsAffx.24970.1.S1_at--477--91Chr03:2461997..2462021 (25 bp)
ATTCCTGCCTTGTTCATGAATGCTA
LOC_Os03g05100
OsAffx.24970.1.S1_at--304--8131Chr03:2462074..2462098 (25 bp)
GGACAGGCTGTTCCAGGAGTTCACA
LOC_Os03g05100
OsAffx.24970.1.S1_at--964--8031Chr03:2462089..2462113 (25 bp)
GGAGTTCACAACCTTCAGGCTAGAG
LOC_Os03g05100
OsAffx.24970.1.S1_at--483--3491Chr03:2462104..2462128 (25 bp)
CAGGCTAGAGGACTTGATCACGGAT
LOC_Os03g05100
OsAffx.24970.1.S1_at--377--1891Chr03:2462123..2462147 (25 bp)
ACGGATATCGAACACCTTAGACTGG
LOC_Os03g05100
OsAffx.24970.1.S1_at--847--911Chr03:2462211..2462235 (25 bp)
AGGCTAGGCTATTTTTCCTGCTAGA
LOC_Os03g05100
OsAffx.24970.1.S1_at--573--9671Chr03:2462246..2462270 (25 bp)
TCACGTTTACGCGACCAATTACCAG
LOC_Os03g05100
Target Sequence 
ACTTCCGTCTGCGTCTGATTAATTGGCCAAAGTCGTACTGTTGTGGCTATGAGGAAATCTGGAAGTTCAGGATTGCGGTT
GAGCTATTGGAGGATTTGATCGAGGAGATCGAACACCGCCGGCTGGAGGAAGATGGTCGCATTCCTGCCTTGTTCATGAA
TGCTAAGGCAAAGATCGCCTTCAAGTTTGCGACAAATGATTATTTCAGGGAGGAGTGGGACAGGCTGTTCCAGGAGTTCA
CAACCTTCAGGCTAGAGGACTTGATCACGGATATCGAACACCTTAGACTGGAAGAGAGTGGAAAAAAGATCTCCAACAAG
AAGTTTGCGAGATCTCCTGATCAGTATAAACAACAGGCTAGGCTATTTTTCCTGCTAGAGAGAGGTGTATCACGTTTACG
CGACCAATTACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis