Browse Element(s) Details


OsAffx.24981.1.S1_at

Description tigr:9631.m00476
TID=OsAffx.24981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0553011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05500Os.7112.1.S1_at11/113+2702148..2702946expressed protein
LOC_Os03g05510OsAffx.24980.1.S1_at11/113+2705807..2706670expressed protein
LOC_Os03g05520OsAffx.12740.1.S1_s_at11/113+2718728..2722222expressed protein
LOC_Os03g05530OsAffx.24981.1.S1_at11/113+2727371..2732402Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g05540OsAffx.24982.1.S1_at11/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05540Os.22671.1.S1_x_at8/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05550OsAffx.24983.1.S1_at11/113+2742575..2743267hypothetical protein
LOC_Os03g05560OsAffx.12741.1.S1_at11/113+2750298..2751529Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g05570Os.20060.1.S1_at11/113+2755737..2756880Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24981.1.S1_at--174--6751Chr03:2728151..2728175 (25 bp)
GTTCATGCAGCACAAGCCGGAAGAT
LOC_Os03g05530
OsAffx.24981.1.S1_at--982--2811Chr03:2728131..2728155 (25 bp)
AAGATTGGCGCATAGGCTTCGGCCT
LOC_Os03g05530
OsAffx.24981.1.S1_at--246--2831Chr03:2728105..2728129 (25 bp)
AAGTTCTGGTGCATCGTCTACTCTG
LOC_Os03g05530
OsAffx.24981.1.S1_at--55--1931Chr03:2727971..2727995 (25 bp)
ACGGTCTTCGCTCAGCTATGGTGCA
LOC_Os03g05530
OsAffx.24981.1.S1_at--61--571Chr03:2727884..2727908 (25 bp)
ATCCTGGCCTACTTCATGTTTGGTG
LOC_Os03g05530
OsAffx.24981.1.S1_at--1024--311Chr03:2727703..2727727 (25 bp)
ATACTCGGCCTTTACATGTTGCTGT
LOC_Os03g05530
OsAffx.24981.1.S1_at--679--391Chr03:2727601..2727625 (25 bp)
ATCACCGAATTTTCTGCGGCGCAGA
LOC_Os03g05530
OsAffx.24981.1.S1_at--1052--6431Chr03:2727535..2727559 (25 bp)
GATCAGATTCAGTTGGTGCTCAGGA
LOC_Os03g05530
OsAffx.24981.1.S1_at--945--10571Chr03:2727474..2727498 (25 bp)
TTCTGATTTGGCCTCTGGTGAACAC
LOC_Os03g05530
OsAffx.24981.1.S1_at--67--7371Chr03:2727457..2727481 (25 bp)
GTGAACACAGATTTTCCACTGCCTC
LOC_Os03g05530
OsAffx.24981.1.S1_at--1026--3251Chr03:2727410..2727434 (25 bp)
CAACGGGTCGTGTGACTTGTGACAA
LOC_Os03g05530
Target Sequence 
GTTCATGCAGCACAAGCCGGAAGATTGGCGCATAGGCTTCGGCCTCAAGTTCTGGTGCATCGTCTACTCTGGATTCGCCT
GCAATGGCTTCACGGTCTTCGCTCAGCTATGGTGCACCGAGAAGAAGGGCCCCGTCTTCGTCACCATGTTCAACCCTCTC
TCCACGATCATGGTGGCCATCCTGGCCTACTTCATGTTTGGTGAAAATCTATACGTTGGAAGCATAATCGGAGGAGTGGT
TGTCATACTCGGCCTTTACATGTTGCTGTGGGGGAAAGACAAGGATCAGGAATACAACGCGAACAAACAGCAGGAATCCG
ATCTGGACTGCGAGAAGCAGGCGAGGATCACCGAATTTTCTGCGGCGCAGAATGACCAGGAGGAGCCGAGGAGGACGAAG
AAGTAAAAAAGGGATCAGATTCAGTTGGTGCTCAGGAAGAAGCAACGCCGTTAAAATTCTGTACATTATGGTTTTCTGAT
TTGGCCTCTGGTGAACACAGATTTTCCACTGCCTCTTACCACAAGTCCACGACTCTTCAACGGGTCGTGTGACTTGTGAC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis