Browse Element(s) Details


OsAffx.25070.1.S1_at

Description tigr:9631.m01187
TID=OsAffx.25070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 17, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g126202/11Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12590Os.10603.1.S1_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12590Os.43914.1.S1_x_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12600OsAffx.32166.1218.S1_x_at5/113+6666205..6674361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g12610Os.25986.3.S1_x_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12610Os.25986.1.S1_a_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12620Os.45998.1.S1_x_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620Os.45998.1.S1_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620OsAffx.25070.1.S1_at2/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12630Os.53367.1.S1_at11/113+6695524..6699225expressed protein
LOC_Os03g12630Os.51565.1.S1_x_at10/113+6695524..6699225expressed protein
LOC_Os03g12640OsAffx.3210.1.S1_at11/113+6699862..6700210hypothetical protein
LOC_Os03g12650OsAffx.9045.1.S1_x_at3/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12650OsAffx.9045.1.S1_at2/113+6712811..6715635retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25070.1.S1_at--36--2071Chr03:6685436..6685460 (25 bp)
ACATACTTTTGTGACCAACTTGGTA
LOC_Os03g12620
OsAffx.25070.1.S1_at--783--5851Chr03:6685424..6685448 (25 bp)
GACCAACTTGGTATCATTGTGCATA
LOC_Os03g12620
OsAffx.25070.1.S1_at--334--10331Chr03:6685337..6685361 (25 bp)
TTTCAGGTACCTACATGCCATTCTT
NONE
OsAffx.25070.1.S1_at--800--10531Chr03:6685203..6685227 (25 bp)
TTCATGGTATGCACAGCCTGTCTAA
NONE
OsAffx.25070.1.S1_at--1064--1771Chr03:6685172..6685196 (25 bp)
ACCGTCCACCTTTTGTGCCAGAAAG
NONE
OsAffx.25070.1.S1_at--795--7271Chr03:6685158..6685182 (25 bp)
GTGCCAGAAAGCACAGCGAGCCGCT
NONE
OsAffx.25070.1.S1_at--267--1431Chr03:6685118..6685142 (25 bp)
AGAAACATAGCACCAAGGCACCTAT
NONE
OsAffx.25070.1.S1_at--766--2931Chr03:6685104..6685128 (25 bp)
AAGGCACCTATCTTCTCAGGTGGAA
NONE
OsAffx.25070.1.S1_at--746--3751Chr03:6685090..6685114 (25 bp)
CTCAGGTGGAACTTTTGTGCTTGAA
NONE
OsAffx.25070.1.S1_at--302--2831Chr03:6685065..6685089 (25 bp)
AAGTTCGTATGTTGTCACTGCTGGA
NONE
OsAffx.25070.1.S1_at--531--1151Chr03:6685029..6685053 (25 bp)
AGTCATGAGTTAAGTTTGTTCCAAA
NONE
Target Sequence 
ACATACTTTTGTGACCAACTTGGTATCATTGTGCATATGAATAGTGACATGTCACTAGATAATATTTCTACGAAGTTGCA
CATAATCGAATGATTAAGCTTTCAGGTACCTACATGCCATTCTTCCACCTTCCAGCCAGCAGCCACCATTCATTAGAGTG
TAAAAAATATCATGTTCTGTAGATTGCATGAGCCATGACGTGCTTTTATCTACAAAACTAACTAATTATCAGTTTCATGG
TATGCACAGCCTGTCTAAACATGCACCGTCCACCTTTTGTGCCAGAAAGCACAGCGAGCCGCTCGCACCAAATTTGACAG
AAACATAGCACCAAGGCACCTATCTTCTCAGGTGGAACTTTTGTGCTTGAAAAGTTCGTATGTTGTCACTGCTGGAAACA
TCAGCATAGTCATGAGTTAAGTTTGTTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis