Browse Element(s) Details


OsAffx.25135.2.S1_x_at

Description tigr:9633.m01445
TID=OsAffx.25135.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1621011/11hypothetical protein
LOC_Os12g178907/11hypothetical protein
LOC_Os11g090501/11hypothetical protein
LOC_Os05g355101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16180OsAffx.4356.1.S1_at10/115+9123860..9129102NB-ARC domain containing protein
LOC_Os05g16200OsAffx.4357.1.S1_at11/115+9130647..9134281NB-ARC domain containing protein
LOC_Os05g16210OsAffx.25135.2.S1_x_at11/115+9150447..9150986hypothetical protein
LOC_Os05g16210OsAffx.3516.1.S1_x_at2/115+9150447..9150986hypothetical protein
LOC_Os05g16220NANA5+9153029..9153328expressed protein
LOC_Os05g16230OsAffx.14726.1.S1_at11/115+9158480..9159589expressed protein
LOC_Os05g16240OsAffx.14727.1.S1_at11/115+9163257..9164510expressed protein
LOC_Os05g16250Os.54392.1.S1_at11/115+9167672..9171691expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25135.2.S1_x_at--1048--7611Chr05:9150491..9150515 (25 bp)
GGGAGCCGGCGGTTGGAGCCAGAGA
LOC_Os05g16210
OsAffx.25135.2.S1_x_at--68--1691Chr05:9150494..9150518 (25 bp)
AGCCGGCGGTTGGAGCCAGAGAGCG
LOC_Os05g16210
OsAffx.25135.2.S1_x_at--1156--6575Chr06:5597780..5597800 (21 bp)
GATTCCTGATAGGTATCACCCGATA
NONE
OsAffx.25135.2.S1_x_at--933--9354Chr05:9150896..9150920 (25 bp)
TCGCAAGTATCACCTTATATGTGGC
LOC_Os05g16210
OsAffx.25135.2.S1_x_at--921--5176Chr05:9150898..9150922 (25 bp)
GCAAGTATCACCTTATATGTGGCAA
LOC_Os05g16210
OsAffx.25135.2.S1_x_at--972--2836Chr05:9150900..9150924 (25 bp)
AAGTATCACCTTATATGTGGCAAGA
LOC_Os05g16210
OsAffx.25135.2.S1_x_at--823--6896Chr05:9150902..9150926 (25 bp)
GTATCACCTTATATGTGGCAAGAAT
LOC_Os05g16210
OsAffx.25135.2.S1_x_at--161--9655Chr09:14640620..14640707 (25 bp)
TCACCTTATATGTGGCAAGAATCGC
NONE
OsAffx.25135.2.S1_x_at--269--4316Chr05:9150908..9150932 (25 bp)
CCTTATATGTGGCAAGAATCGCATG
LOC_Os05g16210
OsAffx.25135.2.S1_x_at--817--10194Chr05:9150911..9150935 (25 bp)
TATATGTGGCAAGAATCGCATGATA
LOC_Os05g16210
OsAffx.25135.2.S1_x_at--964--27344Chr10:17208093..17208117 (25 bp)
AAGAATCGCATGATACCTGATAGGT
NONE
Target Sequence 
GGGAGCCGGCGGTTGGAGCCAGAGAGCGGAGGGATGGGGTGGCGGCGGTGGCCGGAGCCAGAGAGCCGAGGGAGGGGGCG
GCGGCGGTGGCCGGAGCCGGCGGGGGACGGGGCGGGGACGGTGGCCGGAGCCGGGGGAGGGAGCGGCGGCGGTGGTCGGA
GCCGATGGGGGAGGGAGCGGCGACGGGGGCCGGAGCCGGATCCAGGGGATGGGAGGGGGTGGCGGTGGTGCGTCGCTGGA
GCCGGAGGAGGGAGCGGCGGCGGTGGCCGGAGCTAGGGAGGAAGGGGCGCTGGGGCGGCAGTGGTTGGCGGCGTCAATGT
CGGGTGTGTATCGCGTGATACCTGGTAGGTATCGCGTGATACCTGGCTGGTATCGCATGATTCCTGATAGGTATCACCCG
ATACCTCGCAAGTATCACCTTATATGTGGCAAGAATCGCATGATACCTGATAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25135.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis