Browse Element(s) Details


OsAffx.25157.1.S1_at

Description tigr:9631.m01989
TID=OsAffx.25157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2007011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20020Os.32659.1.S1_at11/113+11262173..11266726beta-fructofuranosidase, putative, expressed
LOC_Os03g20040NANA3+11273756..11275890hypothetical protein
LOC_Os03g20050Os.45212.1.S1_x_at1/113+11276194..11279587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g20060OsAffx.25156.1.S1_x_at2/113+11281031..11283633hypothetical protein
LOC_Os03g20060OsAffx.25156.5.S1_x_at2/113+11281031..11283633hypothetical protein
LOC_Os03g20070OsAffx.25157.1.S1_at11/113+11286443..11287140hypothetical protein
LOC_Os03g20080Os.27140.2.S1_at11/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20080Os.27140.1.S1_a_at10/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20080Os.27140.2.S2_at4/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20080OsAffx.10048.1.S1_x_at1/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20090Os.14823.1.S1_s_at11/113+11304927..11307055Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g20090Os.49619.1.S1_at10/113+11304927..11307055Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g20090Os.14823.1.S1_x_at1/113+11304927..11307055Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25157.1.S1_at--266--6331Chr03:11286705..11286729 (25 bp)
GATGCACCTGCACATACATGTTCAC
LOC_Os03g20070
OsAffx.25157.1.S1_at--682--10571Chr03:11286742..11286766 (25 bp)
TTCTTTGTGAATTCAGCTGCGAGCT
LOC_Os03g20070
OsAffx.25157.1.S1_at--1160--4071Chr03:11286761..11286785 (25 bp)
CGAGCTGCAGCGTGTTGATGCTAGA
LOC_Os03g20070
OsAffx.25157.1.S1_at--520--7631Chr03:11286792..11286816 (25 bp)
GGGACATGTTGCATTGATATGGACA
LOC_Os03g20070
OsAffx.25157.1.S1_at--1088--7851Chr03:11286820..11286844 (25 bp)
GGTATATATGACCTGGTGTACACAG
LOC_Os03g20070
OsAffx.25157.1.S1_at--405--7752Chr04:28894722..28894746 (25 bp)
GGTGTACACAGTTGCTTTCCAAGAT
NONE
OsAffx.25157.1.S1_at--28--6672Chr04:28894732..28894753 (22 bp)
GTTGCTTTCCAAGATTACTTCCTCC
NONE
OsAffx.25157.1.S1_at--527--9891Chr03:11286859..11286883 (25 bp)
TACTTCCTCCGTGTGTGTGATATGG
LOC_Os03g20070
OsAffx.25157.1.S1_at--655--8611Chr03:11286881..11286905 (25 bp)
TGGTGAATGCGAACTTGGCCACCTC
LOC_Os03g20070
OsAffx.25157.1.S1_at--1135--8431Chr03:11287009..11287033 (25 bp)
GGCCACCGGTGTGTGACACGCTGCT
LOC_Os03g20070
OsAffx.25157.1.S1_at--1000--9431Chr03:11287081..11287105 (25 bp)
TCGGCGCAGGATGCGCTACGTGCCA
LOC_Os03g20070
Target Sequence 
GATGCACCTGCACATACATGTTCACTACTATTTTGATTTCTTTGTGAATTCAGCTGCGAGCTGCAGCGTGTTGATGCTAG
AGGGAGAGGGACATGTTGCATTGATATGGACATATGGTATATATGACCTGGTGTACACAGTTGCTTTCCAAGATTACTTC
CTCCGTGTGTGTGATATGGTGAATGCGAACTTGGCCACCTCCTGCGCGAAGTGCTCCGCCTCGTGCGCCGCTAGCGCCGG
CGGGCTCCATGAGCCGCACTCGAACCTCTCCAGCGACGCCAGCCGTGACACGCTGCTCCGCCGCGGCCACCGGTGTGTGA
CACGCTGCTCCACCGCTGCATCGCCCTCGTCGTCGTGCGGCACCATGGACCTCCCCTCGGCGCAGGATGCGCTACGTGCC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis