Browse Element(s) Details


OsAffx.25180.1.S1_at

Description tigr:9635.m01265
TID=OsAffx.25180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1285011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12830Os.18445.1.S1_at11/117+7346107..7349941Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os07g12840NANA7+7356513..7360612retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12850OsAffx.25180.1.S1_at11/117+7361845..7368397Protein kinase domain containing protein
LOC_Os07g12850Os.50043.1.A1_at1/117+7361845..7368397Protein kinase domain containing protein
LOC_Os07g12860Os.35344.18.S1_x_at9/117+7370284..7376179transposon protein, putative, Mutator sub-class
LOC_Os07g12860Os.35344.3.S1_x_at8/117+7370284..7376179transposon protein, putative, Mutator sub-class
LOC_Os07g12860OsAffx.22940.5.S1_x_at3/117+7370284..7376179transposon protein, putative, Mutator sub-class
LOC_Os07g12869NANA7+7377402..7378146NA
LOC_Os07g12880OsAffx.9930.1.S1_at6/117+7389872..7391182transposon protein, putative, Pong sub-class
LOC_Os07g12890Os.27175.1.S1_a_at10/117+7392790..7396016ZIP zinc/iron transport family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25180.1.S1_at--438--1711Chr07:7367570..7367592 (23 bp)
ACCACGAGAATAGTAGGCACGCTTG
LOC_Os07g12850
OsAffx.25180.1.S1_at--838--4931Chr07:7367797..7367818 (22 bp)
GCTTGGCTACATATCTCCTGAGTAT
LOC_Os07g12850
OsAffx.25180.1.S1_at--826--6171Chr07:7367896..7367920 (25 bp)
GAGGACTTCTGGATTCTATCCTTAC
LOC_Os07g12850
OsAffx.25180.1.S1_at--494--6571Chr07:7367907..7367931 (25 bp)
GATTCTATCCTTACGATGGCAAACT
LOC_Os07g12850
OsAffx.25180.1.S1_at--742--691Chr07:7368150..7368174 (25 bp)
ATGAGCTGATCTGTTGCTGTATAGA
LOC_Os07g12850
OsAffx.25180.1.S1_at--1130--1291Chr07:7368238..7368262 (25 bp)
AGATGACAGGCCTTGTATCGACCAG
LOC_Os07g12850
OsAffx.25180.1.S1_at--393--8771Chr07:7368251..7368275 (25 bp)
TGTATCGACCAGGTGGTCACTATGC
LOC_Os07g12850
OsAffx.25180.1.S1_at--849--6131Chr07:7368284..7368308 (25 bp)
GAGGGAATGACCTTGCCCGGACCAA
LOC_Os07g12850
OsAffx.25180.1.S1_at--261--2271Chr07:7368307..7368331 (25 bp)
AAATCAGCCAGCCTACTTCTATGTC
LOC_Os07g12850
OsAffx.25180.1.S1_at--375--10571Chr07:7368323..7368347 (25 bp)
TTCTATGTCCGCTCTAGTGGCAGCT
LOC_Os07g12850
OsAffx.25180.1.S1_at--711--7531Chr07:7368339..7368363 (25 bp)
GTGGCAGCTCAGATGTTTTATCATG
LOC_Os07g12850
Target Sequence 
ACCACGAGAATAGTAGGCACGCTTGGCTACATATCTCCTGAGTATATTTTTGATGGGGTTTGCTCGATCAAGTCGGACGT
CTTCAGTTTTGGCGTCTTGGTCTTGGAAATCATAAGTGGAAAGAGGACTTCTGGATTCTATCCTTACGATGGCAAACTAT
ACAATCTCATTTCATACGCTTGGCTACTTTGGAGATCTGGACAGGGGCATGAGCTGATCTGTTGCTGTATAGAAAACAAT
CATGAATCGATACAAAGGTGCATTCAGGTGGCACTTTTATGTGTTCAGGAGAGGGCAGATGACAGGCCTTGTATCGACCA
GGTGGTCACTATGCTAAACAGCGAGGGAATGACCTTGCCCGGACCAAATCAGCCAGCCTACTTCTATGTCCGCTCTAGTG
GCAGCTCAGATGTTTTATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis