Browse Element(s) Details


OsAffx.25191.1.S1_at

Description tigr:9631.m02245
TID=OsAffx.25191.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2250011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22490OsAffx.25190.1.S1_x_at11/113+12884726..12886584heavy metal-associated domain containing protein, expressed
LOC_Os03g22500OsAffx.25191.1.S1_at11/113+12905217..12906646hypothetical protein
LOC_Os03g22500Os.32925.1.S1_at1/113+12905217..12906646hypothetical protein
LOC_Os03g22510NANA3+12909096..12909630flowering promoting factor-like 1, putative, expressed
LOC_Os03g22519Os.51598.1.S1_s_at10/113+12916497..12917048expressed protein
LOC_Os03g22530NANA3+12920799..12921245Lichenase II precursor, putative
LOC_Os03g22540Os.5672.1.S1_at11/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22540OsAffx.13634.1.S1_at1/113+12924804..12931469jmjC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25191.1.S1_at--848--8071Chr03:12906368..12906392 (25 bp)
GGAGCCGGTCGGGTGCAAATATTCA
LOC_Os03g22500
OsAffx.25191.1.S1_at--529--5131Chr03:12906354..12906378 (25 bp)
GCAAATATTCACAGGCATGCCTCTT
LOC_Os03g22500
OsAffx.25191.1.S1_at--341--2111Chr03:12906344..12906368 (25 bp)
ACAGGCATGCCTCTTAAGACGTCCA
LOC_Os03g22500
OsAffx.25191.1.S1_at--1093--3751Chr03:12906334..12906358 (25 bp)
CTCTTAAGACGTCCACCTGTGAAAA
LOC_Os03g22500
OsAffx.25191.1.S1_at--728--6031Chr03:12906281..12906305 (25 bp)
GAGTTTTTCGAATCCTTTTACATAT
LOC_Os03g22500
OsAffx.25191.1.S1_at--46--2091Chr03:12906262..12906286 (25 bp)
ACATATGGGCTTTCTTTTAGTCCGC
LOC_Os03g22500
OsAffx.25191.1.S1_at--1034--2671Chr03:12905830..12905854 (25 bp)
AAGCTCCACCTAAGTTACAGCCCGA
LOC_Os03g22500
OsAffx.25191.1.S1_at--770--1191Chr03:12905621..12905645 (25 bp)
AGTATACCTGAGGTCCCTTACCTTG
LOC_Os03g22500
OsAffx.25191.1.S1_at--1119--6451Chr03:12905710..12905734 (25 bp)
GATAAAACGTATCCTCCAATTTCTA
LOC_Os03g22500
OsAffx.25191.1.S1_at--858--192Chr06:24410617..24410689 (25 bp)
ATCCTCCAATTTCTAAAACCACTGC
NONE
OsAffx.25191.1.S1_at--1062--6031Chr03:12905671..12905695 (25 bp)
GAGATCCCTTACCTAAGTTACAGCC
LOC_Os03g22500
Target Sequence 
GGAGCCGGTCGGGTGCAAATATTCACAGGCATGCCTCTTAAGACGTCCACCTGTGAAAATGGATTTTTATAAACGGGTCT
ATATTGGGAGTTTTTCGAATCCTTTTACATATGGGCTTTCTTTTAGTCCGCCTAAAAAAGGCCCAAACGCGGAAGAGGCC
CCCGGCTCCAAGCTCCACCTAAGTTACAGCCCGACCCAGCAACAGAGTGCAGGAAAAAGTATACCTGAGGTCCCTTACCT
TGTTACCGTCTTACCGAGTTACAAAATCGTCCCTGAACCAAAAAAATCAGATAAAACGTATCCTCCAATTTCTAAAACCA
CTGCAAACGAGATCCCTTACCTAAGTTACAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis