Browse Element(s) Details


OsAffx.25211.1.S1_at

Description tigr:9631.m02415
TID=OsAffx.25211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2476011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24710OsAffx.25210.1.S1_x_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24710OsAffx.25210.1.S1_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24720OsAffx.13008.1.S1_at10/113+14068370..14071309hypothetical protein
LOC_Os03g24730Os.46762.1.S1_at11/113+14073184..14076758expressed protein
LOC_Os03g24730Os.17424.1.S1_x_at1/113+14073184..14076758expressed protein
LOC_Os03g24740OsAffx.3314.1.S1_at11/113+14078892..14079206hypothetical protein
LOC_Os03g24750NANA3+14081180..14081383hypothetical protein
LOC_Os03g24760OsAffx.25211.1.S1_x_at11/113+14086274..14088966Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24760OsAffx.25211.1.S1_at11/113+14086274..14088966Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24770OsAffx.13010.1.S1_x_at8/113+14098148..14099149expressed protein
LOC_Os03g24770OsAffx.24701.1.S1_at3/113+14098148..14099149expressed protein
LOC_Os03g24780NANA3+14102097..14104926retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24790NANA3+14105468..14107108transposon protein, putative, unclassified
LOC_Os03g24800OsAffx.22004.1.S1_at3/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.31069.1.S1_x_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.3940.1.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.22004.2.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25211.1.S1_at--637--9951Chr03:14086984..14087008 (25 bp)
TACCGCATGTCTTACGCCAAAACTG
LOC_Os03g24760
OsAffx.25211.1.S1_at--122--6851Chr03:14086838..14087000 (25 bp)
GTCTTACGCCAAAACTGGGTACAAG
LOC_Os03g24760
OsAffx.25211.1.S1_at--230--7691Chr03:14086822..14086844 (23 bp)
GGGTACAAGCAGTTGTCGGAATACT
LOC_Os03g24760
OsAffx.25211.1.S1_at--246--491Chr03:14086743..14086767 (25 bp)
ATCTGGACGTGTCTGTCATGTCCTC
LOC_Os03g24760
OsAffx.25211.1.S1_at--622--1911Chr03:14086737..14086761 (25 bp)
ACGTGTCTGTCATGTCCTCCGGCTT
LOC_Os03g24760
OsAffx.25211.1.S1_at--971--751Chr03:14086726..14086750 (25 bp)
ATGTCCTCCGGCTTCCCGGAGCTGG
LOC_Os03g24760
OsAffx.25211.1.S1_at--716--5891Chr03:14086708..14086732 (25 bp)
GAGCTGGCCCCGGTGGTGCTGTTGG
LOC_Os03g24760
OsAffx.25211.1.S1_at--54--911Chr03:14086650..14086674 (25 bp)
AGGCGTTCGGGTGGGCGGCTGCCGT
LOC_Os03g24760
OsAffx.25211.1.S1_at--938--7731Chr03:14086417..14086441 (25 bp)
GGTGGTCGGGCTGATCATCTGCTCC
LOC_Os03g24760
OsAffx.25211.1.S1_at--263--8411Chr03:14086315..14086339 (25 bp)
GGCGCCGACATCAAAGACCTCGTCA
LOC_Os03g24760
OsAffx.25211.1.S1_at--91--9711Chr03:14086305..14086329 (25 bp)
TCAAAGACCTCGTCACCAACTTCTT
LOC_Os03g24760
Target Sequence 
TACCGCATGTCTTACGCCAAAACTGGGTACAAGCAGTTGTCGGAATACTACCTCCGTGAGGCCCAATGGTCGAGCGACAA
ATACATGCCCAGCTTCGCCGAGCATCTGGACGTGTCTGTCATGTCCTCCGGCTTCCCGGAGCTGGCCCCGGTGGTGCTGT
TGGGCGTGCGCGACGGCGACGGCGCGGCGACCGCGGAGGCGTTCGGGTGGGCGGCTGCCGTCCCCGCCCTGGCCCGCGCC
AGCGGGGAGCTAGCCCGCTTCCTCAACGACGTCGCCTCCTACAGGACCGGGAGGAGCGGCAGGGACATGGCGAGCACGGT
GGAGTGCTACATGGCGGAGCGCGGCGTGGGCGGGGAGGAGGCCGTGGCGGCGGTTGCCGCGATGGCGGAGCGCGCGTGGA
GGACGATCAACCGGGAGTGCGTGGAGATGGGTGGTCGGGCTGATCATCTGCTCCCGGCGGCGCGGCTGGTGGTGAACCTG
ACGAGGATGCTGGAGGTGATCTATCTCGGTGGCAGGGACGGGTACACCTTCGGCGCCGACATCAAAGACCTCGTCACCAA
CTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis