Browse Element(s) Details


OsAffx.25214.1.S1_at

Description tigr:9631.m02427
TID=OsAffx.25214.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2488011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24830OsAffx.25213.1.S1_at11/113+14126503..14129148expressed protein
LOC_Os03g24830Os.8404.1.S1_s_at11/113+14126503..14129148expressed protein
LOC_Os03g24844Os.18653.1.S1_at11/113+14129295..14132486Uncharacterised protein family containing protein, expressed
LOC_Os03g24860Os.24794.2.S1_at11/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24860Os.24794.1.S1_x_at10/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24870Os.31838.1.S1_at10/113+14144400..14149212Sugar transporter family protein, expressed
LOC_Os03g24880OsAffx.25214.1.S1_at11/113+14153330..14155024pentatricopeptide, putative
LOC_Os03g24890Os.6246.1.S1_at11/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.25215.1.S1_at10/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.10482.1.S1_x_at1/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24900Os.10674.1.S1_at11/113+14162432..14166957zinc finger family protein, putative, expressed
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25214.1.S1_at--978--10211Chr03:14153906..14153930 (25 bp)
TTTGGTCACAGGGTTTTGTACCCAT
LOC_Os03g24880
OsAffx.25214.1.S1_at--322--7751Chr03:14153753..14153777 (25 bp)
GGTGTACGAGCAGCTACTGTCATCT
LOC_Os03g24880
OsAffx.25214.1.S1_at--201--4851Chr03:14153741..14153765 (25 bp)
GCTACTGTCATCTGGTTTGGAGCCA
LOC_Os03g24880
OsAffx.25214.1.S1_at--325--8091Chr03:14153723..14153747 (25 bp)
GGAGCCAAGTGTGTCAACCTTCACG
LOC_Os03g24880
OsAffx.25214.1.S1_at--1100--4151Chr03:14153700..14153724 (25 bp)
CGCCGCTCATTGACACCATGTGTGA
LOC_Os03g24880
OsAffx.25214.1.S1_at--897--8251Chr03:14153623..14153647 (25 bp)
GGCTTGGAACCGTTAGCGCGGATCA
LOC_Os03g24880
OsAffx.25214.1.S1_at--219--5531Chr03:14153513..14153537 (25 bp)
GAAACCTCGGGAACATACATTTAAT
LOC_Os03g24880
OsAffx.25214.1.S1_at--931--91Chr03:14153490..14153514 (25 bp)
ATTCCCTGGTAGAATTGCTGAGCTC
LOC_Os03g24880
OsAffx.25214.1.S1_at--674--6291Chr03:14153452..14153476 (25 bp)
GATGATGCACTGTTAGTCCTAAATA
LOC_Os03g24880
OsAffx.25214.1.S1_at--322--10831Chr03:14153395..14153419 (25 bp)
TTGGCTTGTACTATGCTTGTCGAAC
LOC_Os03g24880
OsAffx.25214.1.S1_at--103--631Chr03:14153383..14153407 (25 bp)
ATGCTTGTCGAACAGCTATGCACAG
LOC_Os03g24880
Target Sequence 
TTTGGTCACAGGGTTTTGTACCCATGGGAGGGTGGACGAAGCGCTTGGGATGTTTGAGGAAATGGTTAAAAAGGGGATTG
AGCATGATGTGATTACTTACAACATATTGATTCAGGGCTTATGCAAGGCTGGGAGGTTGAGTGAGGCAATACAGGTGTAC
GAGCAGCTACTGTCATCTGGTTTGGAGCCAAGTGTGTCAACCTTCACGCCGCTCATTGACACCATGTGTGAGGAAGGACA
GGTTGATGCTGCAGTTGAATTGCTTAAGGTGATGCATGCTAAGGGCTTGGAACCGTTAGCGCGGATCAATGATAGTATCA
TAAATGGGTTCTGTAAAGCCAGGAGACCTGAGGACGGCATGGCATGGTTGGCAGGCATGTTAAAGAAGAATCTGAAACCT
CGGGAACATACATTTAATTCCCTGGTAGAATTGCTGAGCTCCTCTGGGCGGGTGGATGATGCACTGTTAGTCCTAAATAC
AATGTTCAAAATTGGACATGAACTAGGAAGCTTGGCTTGTACTATGCTTGTCGAACAGCTATGCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis