Browse Element(s) Details


OsAffx.25218.1.S1_at

Description tigr:9631.m02443
TID=OsAffx.25218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2502011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24980OsAffx.25217.2.S1_x_at11/113+14234177..14237333SWIM zinc finger family protein
LOC_Os03g24990Os.33624.3.S1_x_at10/113+14237587..14241404Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24990OsAffx.25216.1.S1_x_at5/113+14237587..14241404Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g25000OsAffx.3317.1.S1_at11/113+14247529..14250741GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25010OsAffx.13013.1.S1_at11/113+14255279..14258382GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25020OsAffx.25218.1.S1_at11/113+14261154..14263772hypothetical protein
LOC_Os03g25030Os.18713.1.S1_at11/113+14268397..14272079GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25040Os.5919.1.S1_at11/113+14274404..14276702GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25050OsAffx.13014.1.S1_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050OsAffx.13014.1.S1_s_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050Os.8895.1.S1_at10/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25060Os.54316.1.S1_at11/113+14281127..14281793expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25218.1.S1_at--111--8971Chr03:14261715..14261955 (25 bp)
TGACAAGCAATCAACTCCTTCCTAT
LOC_Os03g25020
OsAffx.25218.1.S1_at--136--8352Chr11:9701068..9701092 (25 bp)
GGCTGGCACCTGCAATTGATACCAA
NONE
OsAffx.25218.1.S1_at--429--10031Chr03:14263009..14263033 (25 bp)
TAGACGTTCCCTACAATAGCTCTTC
LOC_Os03g25020
OsAffx.25218.1.S1_at--185--1591Chr03:14263026..14263050 (25 bp)
AGCTCTTCTCTACTCATTATTGATG
LOC_Os03g25020
OsAffx.25218.1.S1_at--830--8851Chr03:14263046..14263070 (25 bp)
TGATGCCTCCAATTTATTCGAACCC
LOC_Os03g25020
OsAffx.25218.1.S1_at--289--9291Chr03:14263134..14263158 (25 bp)
TCCGCCTTGGAAGCCCTATGGGTGA
LOC_Os03g25020
OsAffx.25218.1.S1_at--597--2931Chr03:14263162..14263504 (25 bp)
AAGGCAGCCCCGATACGCATAAAGA
LOC_Os03g25020
OsAffx.25218.1.S1_at--968--2231Chr03:14263521..14263545 (25 bp)
AAATTCATCGAAGCAGCCGTCGCAC
LOC_Os03g25020
OsAffx.25218.1.S1_at--29--1911Chr03:14263582..14263606 (25 bp)
ACGTGCCCAAGGATGCATGGCCAGG
LOC_Os03g25020
OsAffx.25218.1.S1_at--640--4951Chr03:14263609..14263633 (25 bp)
GCATATCTGCACTCCCGAGGAAGGC
LOC_Os03g25020
OsAffx.25218.1.S1_at--701--531Chr03:14263695..14263719 (25 bp)
ATCGCGGTCATTGTCGTGTGGCAGA
LOC_Os03g25020
Target Sequence 
TGACAAGCAATCAACTCCTTCCTATCATCGAAGTCTTTAGTGATATTCACTATGCATTTGGGCTGGCACCTGCAATTGAT
ACCAAAGATATGAAGAGGGAACAGAGAAAAGATATTGGGAAGCCACTAGACGTTCCCTACAATAGCTCTTCTCTACTCAT
TATTGATGCCTCCAATTTATTCGAACCCCGTAAGGGACCCGATCAAAGGGCAAACGATCCACCCCGCACTGGCACCAGAA
GATATACGGGGTCCGCCTTGGAAGCCCTATGGGTGAAAAAAGGCAGCCCCGATACGCATAAAGAGAGATCAAAGAACAAA
AAATTCATCGAAGCAGCCGTCGCACGCCTGCGCCGCTCCCGAGCAAATCCGAGGCGGATCCACGTGCCCAAGGATGCATG
GCCAGGCGGCATATCTGCACTCCCGAGGAAGGCCAATGGCAGCAGATCCGCGCATCCGAGGCCGATCGTCATCTCTATCG
CTGATGCCGTCGTCATCGCGGTCATTGTCGTGTGGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis