Browse Element(s) Details


OsAffx.25241.1.S1_at

Description tigr:9631.m02629
TID=OsAffx.25241.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2672011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26660OsAffx.25238.1.S1_at11/113+15208695..15208943hypothetical protein
LOC_Os03g26670OsAffx.25239.1.S1_at11/113+15211105..15211572hypothetical protein
LOC_Os03g26680OsAffx.25243.2.S1_at11/113+15214274..15214832hypothetical protein
LOC_Os03g26690OsAffx.11259.1.S1_at1/113+15216866..15221596hypothetical protein
LOC_Os03g26704OsAffx.22699.1.S1_x_at2/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.19306.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.20414.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.31697.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.22603.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26720OsAffx.25241.1.S1_at11/113+15230246..15230785hypothetical protein
LOC_Os03g26730NANA3+15233882..15234925hypothetical protein
LOC_Os03g26750NANA3+15238581..15245144retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25241.1.S1_at--54--8731Chr03:15230627..15230651 (25 bp)
TGTCGGTAGCTCAACATGGACTGCC
LOC_Os03g26720
OsAffx.25241.1.S1_at--373--7791Chr03:15230516..15230540 (25 bp)
GGTCGTTCCGGCTGATATCCTGACA
LOC_Os03g26720
OsAffx.25241.1.S1_at--623--251Chr03:15230502..15230526 (25 bp)
ATATCCTGACATCCTATGACCCTAG
LOC_Os03g26720
OsAffx.25241.1.S1_at--583--10111Chr03:15230488..15230512 (25 bp)
TATGACCCTAGCAACACAGACAGCC
LOC_Os03g26720
OsAffx.25241.1.S1_at--251--5631Chr03:15230470..15230494 (25 bp)
GACAGCCCCTTCATACGACAATCAT
LOC_Os03g26720
OsAffx.25241.1.S1_at--629--3071Chr03:15230451..15230475 (25 bp)
AATCATCGGCATTGTTCGTTCTTAT
LOC_Os03g26720
OsAffx.25241.1.S1_at--578--6711Chr03:15230438..15230462 (25 bp)
GTTCGTTCTTATTGTGGCATCATCC
LOC_Os03g26720
OsAffx.25241.1.S1_at--286--4571Chr03:15230382..15230406 (25 bp)
GCGCTGGTGGCATAGACTACTTCGT
LOC_Os03g26720
OsAffx.25241.1.S1_at--357--1411Chr03:15230369..15230393 (25 bp)
AGACTACTTCGTGATGGACCATCTC
LOC_Os03g26720
OsAffx.25241.1.S1_at--288--7591Chr03:15230291..15230315 (25 bp)
GGGCATCCGTGATATGGGTCTCATG
LOC_Os03g26720
OsAffx.25241.1.S1_at--318--251Chr03:15230280..15230304 (25 bp)
ATATGGGTCTCATGCGTCGTGACGG
LOC_Os03g26720
Target Sequence 
TGTCGGTAGCTCAACATGGACTGCCCCTATGGCCACGTCCCGCGGCGTGCGTTTCCAACTATCCCTACGCCCAAAAGAGA
CACCAGGAGTCTCTCGCCTGCTGTTCAAGGCGGTCGTTCCGGCTGATATCCTGACATCCTATGACCCTAGCAACACAGAC
AGCCCCTTCATACGACAATCATCGGCATTGTTCGTTCTTATTGTGGCATCATCCAACGACAAAGCTATACTCCTGCAGGC
CTTATGCGCTGGTGGCATAGACTACTTCGTGATGGACCATCTCGACCACTCGTCCCTTGCCATGACCCGCTTTCCAGACA
TGCCGCCTCGCGTGTGGGGCATCCGTGATATGGGTCTCATGCGTCGTGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis