Browse Element(s) Details


OsAffx.25258.2.S1_x_at

Description tigr:9631.m02742
TID=OsAffx.25258.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2775011/11hypothetical protein
LOC_Os06g357302/1160S ribosomal protein L11-1, putative, expressed
LOC_Os08g380501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27700OsAffx.3348.1.S1_at10/113+15856534..15860546hypothetical protein
LOC_Os03g27700OsAffx.14655.1.S1_at1/113+15856534..15860546hypothetical protein
LOC_Os03g27710OsAffx.29576.5.S1_at5/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.19006.1.S1_at3/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.10155.1.S1_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710Os.54924.1.S1_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.10155.1.S1_x_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27720Os.47463.1.S1_x_at6/113+15867784..15868773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27720Os.14491.2.S1_x_at5/113+15867784..15868773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27730NANA3+15869253..15875240transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27740OsAffx.25257.1.S1_at11/113+15880442..15880855expressed protein
LOC_Os03g27750OsAffx.25258.2.S1_x_at11/113+15884347..15885626hypothetical protein
LOC_Os03g27750OsAffx.25258.2.S1_at11/113+15884347..15885626hypothetical protein
LOC_Os03g27760Os.51941.1.S1_s_at11/113+15886800..15890984nodulation protein, putative, expressed
LOC_Os03g27770Os.22477.1.S1_at10/113+15902760..15906196heme oxygenase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007049biological_processcell cycle
GO:0010102biological_processlateral root morphogenesis
GO:0005842cellular_componentcytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25258.2.S1_x_at--933--9152Chr03:15884448..15884472 (25 bp)
TGCGCAGCCGCGAACAAGGAGAGCC
LOC_Os03g27750
OsAffx.25258.2.S1_x_at--169--4671Chr03:15884839..15884863 (25 bp)
GCGTGACGACGCCAATAGCACAAGG
LOC_Os03g27750
OsAffx.25258.2.S1_x_at--746--10011Chr03:15884854..15884878 (25 bp)
TAGCACAAGGCGGATGACGGTCAGC
LOC_Os03g27750
OsAffx.25258.2.S1_x_at--1124--4351Chr03:15884973..15884997 (25 bp)
CCACCTTCTGGTCGCCTTGGCGGTT
LOC_Os03g27750
OsAffx.25258.2.S1_x_at--900--10591Chr03:15884978..15885002 (25 bp)
TTCTGGTCGCCTTGGCGGTTCCTCG
LOC_Os03g27750
OsAffx.25258.2.S1_x_at--1130--3754Chr03:15885013..15885037 (25 bp)
CTCTTCGCTTGTTGATATCTTGGTC
LOC_Os03g27750
OsAffx.25258.2.S1_x_at--92--5091Chr03:15885081..15885105 (25 bp)
GCACCTTGCGGTTGAGCTCATGGCA
LOC_Os03g27750
OsAffx.25258.2.S1_x_at--1058--5431Chr03:15885129..15885577 (25 bp)
GAACCTGGCGTGCTCCGTACAGAAT
LOC_Os03g27750
OsAffx.25258.2.S1_x_at--234--8371Chr03:15885135..15885583 (25 bp)
GGCGTGCTCCGTACAGAATATTTTC
LOC_Os03g27750
OsAffx.25258.2.S1_x_at--411--4791Chr03:15885140..15885588 (25 bp)
GCTCCGTACAGAATATTTTCACTGG
LOC_Os03g27750
OsAffx.25258.2.S1_x_at--289--3411Chr03:15885572..15885596 (25 bp)
CAGAATATTTTCACTGGAAACAAGC
LOC_Os03g27750
Target Sequence 
TGCGCAGCCGCGAACAAGGAGAGCCACGCCTTCACCGCCGCCTCGCGATGACGATGGCGATGAGTTCGATCTCCGGCCGC
CGCCCAGCCGCGTGCATGAGCTGGAGGAGGTGCCCGGCGAGTTTCGGCACGTTGGCGATGCCGTCGTGCGTGACGACGCC
AATAGCACAAGGCGGATGACGGTCAGCCTGATGGCGCCGTCGTTCTTGGCGAGGTGGCATGCGAACGCCACCGACTCCCG
GTCGTCGGGGCAGCCGAGGAAGACGGCGGCGATCTGGGTCCCCACCTTCTGGTCGCCTTGGCGGTTCCTCGCCGCCGTCG
TCTCTTCGCTTGTTGATATCTTGGTCGGCAGCTGGAAGCTGGCGCCAACGGTGCACGGGGCAAGCTCGAGCACCTTGCGG
TTGAGCTCATGGCAATGGTGCTCGCGGGCACCCCGTCGAACCTGGCGTGCTCCGTACAGAATATTTTCACTGGAAACAAG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25258.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis