Browse Element(s) Details

OsAffx.25281.1.S1_at

Description

tigr:9631.m02883
TID=OsAffx.25281.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cell cycle associated protein Mob1-like protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g29570	9/11	Mps one binder kinase activator-like 1A, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g29540	Os.17294.1.S1_a_at	11/11	3	+	16791773..16795748	ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29540	OsAffx.26598.2.S1_at	2/11	3	+	16791773..16795748	ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29540	OsAffx.26598.2.S1_x_at	1/11	3	+	16791773..16795748	ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29550	NA	NA	3	+	16796274..16797767	retrotransposon protein, putative, LINE subclass
LOC_Os03g29560	Os.46012.2.S1_x_at	10/11	3	+	16800700..16807802	retrotransposon protein, putative, unclassified
LOC_Os03g29560	Os.46012.3.S1_x_at	7/11	3	+	16800700..16807802	retrotransposon protein, putative, unclassified
LOC_Os03g29560	Os.27088.1.A1_x_at	5/11	3	+	16800700..16807802	retrotransposon protein, putative, unclassified
LOC_Os03g29560	Os.49232.1.S1_x_at	1/11	3	+	16800700..16807802	retrotransposon protein, putative, unclassified
LOC_Os03g29560	Os.54691.1.S1_x_at	1/11	3	+	16800700..16807802	retrotransposon protein, putative, unclassified
LOC_Os03g29570	OsAffx.25281.1.S1_at	9/11	3	+	16811515..16817757	Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g29570	Os.52574.2.S1_x_at	1/11	3	+	16811515..16817757	Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g29584	OsAffx.25282.1.S1_at	11/11	3	+	16818929..16824042	hypothetical protein
LOC_Os03g29584	OsAffx.3364.1.S1_at	10/11	3	+	16818929..16824042	hypothetical protein
LOC_Os03g29600	OsAffx.10065.1.S1_at	4/11	3	+	16828734..16831972	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29600	Os.53970.1.S1_at	1/11	3	+	16828734..16831972	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29614	Os.56985.1.S1_a_at	11/11	3	+	16834438..16838634	Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g29614	OsAffx.22005.1.S1_x_at	1/11	3	+	16834438..16838634	Myb-like DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0005634	cellular_component	nucleus
GO:0009524	cellular_component	phragmoplast

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.25281.1.S1_at--808--835	1	Chr03:16816596..16816620 (25 bp)	GGCGGTCCGTCTGCCAATTGGAGAA	LOC_Os03g29570
OsAffx.25281.1.S1_at--902--247	1	Chr03:16813483..16813503 (21 bp)	AACACCGTAGACTTCTTCAACCAAG	LOC_Os03g29570
OsAffx.25281.1.S1_at--120--735	1	Chr03:16813459..16813483 (25 bp)	GTGAACTTTCTGTACGGAACCCTGA	LOC_Os03g29570
OsAffx.25281.1.S1_at--587--83	1	Chr03:16813435..16813459 (25 bp)	ATGGAGTTCTGCACTTCATCTACCT	LOC_Os03g29570
OsAffx.25281.1.S1_at--372--871	1	NONE	TGTCTGCCGGACCAAAGTACGAGTA	NONE
OsAffx.25281.1.S1_at--710--265	1	Chr03:16812566..16812590 (25 bp)	AAGCCAGTTCAAGTGTCTGCTCCAA	LOC_Os03g29570
OsAffx.25281.1.S1_at--634--629	1	Chr03:16812500..16812524 (25 bp)	GATGATGAGGCCATTTTCCCTCAAA	LOC_Os03g29570
OsAffx.25281.1.S1_at--76--883	1	Chr03:16812291..16812315 (25 bp)	TGATCAGGACCATCTTCAAGCGGCT	LOC_Os03g29570
OsAffx.25281.1.S1_at--664--211	1	Chr03:16812249..16812273 (25 bp)	ACATGTACCACTCGCATTTTCAGAT	LOC_Os03g29570
OsAffx.25281.1.S1_at--493--869	1	NONE	TGTGCTCTTCACTTGGGAATTCCAT	NONE
OsAffx.25281.1.S1_at--280--521	1	Chr03:16811568..16811592 (25 bp)	GAATTCCATTTGATCGACAGGGCAG	LOC_Os03g29570

Target Sequence

GGCGGTCCGTCTGCCAATTGGAGAAGATCTCAACGAATGGCTCGCTGTCAACACCGTAGACTTCTTCAACCAAGTGAACT
TTCTGTACGGAACCCTGATGGAGTTCTGCACTTCATCTACCTGCCCGATCATGTCTGCCGGACCAAAGTACGAGTACAGG
TGGGCTGATGGAATGAAGGTGAAGAAGCCAGTTCAAGTGTCTGCTCCAAAGTACGTGGAGTACCTGATGGATTGGGTGGA
GAGCCAGCTTGATGATGAGGCCATTTTCCCTCAAAAGATTGGGGCTCCCTTCCCTCAAAACTTTCGCGAGGTGATCAGGA
CCATCTTCAAGCGGCTCTTCAGGGTGTACTCCCACATGTACCACTCGCATTTTCAGATGATCCTCAAGCTCAAGGAGGAG
GCCCATCTCAGCACTTGCTTCAAGCACTTTGTGCTCTTCACTTGGGAATTCCATTTGATCGACAGGGCAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis