Browse Element(s) Details


OsAffx.25299.1.S1_at

Description tigr:9631.m02986
TID=OsAffx.25299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3050011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30460Os.26723.1.S1_at11/113+17331418..17341791Vps52/Sac2 family protein, putative, expressed
LOC_Os03g30470Os.36593.2.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30470Os.51172.1.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30470Os.2692.1.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30500OsAffx.25299.1.S1_at11/113+17355163..17355787hypothetical protein
LOC_Os03g30510OsAffx.13129.1.S1_at11/113+17358678..17363851hypothetical protein
LOC_Os03g30519Os.20030.1.S1_at11/113+17364930..17367884expressed protein
LOC_Os03g30530Os.7729.1.S1_at11/113+17377013..17381690expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25299.1.S1_at--474--731Chr03:17355733..17355757 (25 bp)
ATGTTCTGGCACAGCCTAGAGCTTG
LOC_Os03g30500
OsAffx.25299.1.S1_at--131--8231Chr03:17355726..17355750 (25 bp)
GGCACAGCCTAGAGCTTGGCGTCCA
LOC_Os03g30500
OsAffx.25299.1.S1_at--198--7271Chr03:17355706..17355730 (25 bp)
GTCCACGGAGGCGTGAAGCAACCCA
LOC_Os03g30500
OsAffx.25299.1.S1_at--424--911Chr03:17355698..17355722 (25 bp)
AGGCGTGAAGCAACCCACGGGATGC
LOC_Os03g30500
OsAffx.25299.1.S1_at--559--6631Chr03:17355670..17355694 (25 bp)
GTTGTCGGGCAAGTTGAGCCACGCC
LOC_Os03g30500
OsAffx.25299.1.S1_at--748--3971Chr03:17355665..17355689 (25 bp)
CGGGCAAGTTGAGCCACGCCGTGTT
LOC_Os03g30500
OsAffx.25299.1.S1_at--286--8811Chr03:17355277..17355668 (25 bp)
TGTTGCCGCGGAACCGCCCGTGGAA
LOC_Os03g30500
OsAffx.25299.1.S1_at--274--8171Chr03:17355268..17355659 (25 bp)
GGAACCGCCCGTGGAACCACAGGCA
LOC_Os03g30500
OsAffx.25299.1.S1_at--733--6971Chr03:17355225..17355249 (25 bp)
GTACCGTGGGCAGCCCGTGGGCAGG
LOC_Os03g30500
OsAffx.25299.1.S1_at--1067--8251Chr03:17355206..17355230 (25 bp)
GGCAGGCACGGCACGACACGAACTG
LOC_Os03g30500
OsAffx.25299.1.S1_at--301--8251Chr03:17355197..17355221 (25 bp)
GGCACGACACGAACTGCCGACCGTG
LOC_Os03g30500
Target Sequence 
ATGTTCTGGCACAGCCTAGAGCTTGGCGTCCACGGAGGCGTGAAGCAACCCACGGGATGCGGCGTTGTCGGGCAAGTTGA
GCCACGCCGTGTTGCCGCGGAACCGCCCGTGGAACCACAGGCACGGCACGGCCTGCCGACCGTACCGTGGGCAGCCCGTG
GGCAGGCACGGCACGACACGAACTGCCGACCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis