Browse Element(s) Details


OsAffx.25304.1.S1_at

Description tigr:9631.m03007
TID=OsAffx.25304.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3069011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30600OsAffx.31801.3.S1_at11/113+17415705..17416917hypothetical protein
LOC_Os03g30610OsAffx.25300.1.S1_at11/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30610Os.35752.3.S1_x_at2/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30610Os.35752.3.S1_at1/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30620OsAffx.3372.1.S1_at11/113+17421248..17422192hypothetical protein
LOC_Os03g30630OsAffx.25301.1.S1_at11/113+17424155..17424775expressed protein
LOC_Os03g30640OsAffx.3373.1.S1_at11/113+17426287..17427090hypothetical protein
LOC_Os03g30650OsAffx.25302.1.S1_at11/113+17428163..17429788hypothetical protein
LOC_Os03g30650OsAffx.25302.2.S1_at1/113+17428163..17429788hypothetical protein
LOC_Os03g30660OsAffx.25302.2.S1_at11/113+17432403..17433119hypothetical protein
LOC_Os03g30670NANA3+17436568..17436930hypothetical protein
LOC_Os03g30680OsAffx.25303.1.S1_at11/113+17438020..17438877hypothetical protein
LOC_Os03g30690OsAffx.25304.1.S1_at11/113+17440773..17441603hypothetical protein
LOC_Os03g30700OsAffx.661.1.S1_x_at1/113+17442787..17445432retrotransposon protein, putative, unclassified
LOC_Os03g30710Os.56292.1.S1_x_at2/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.27691.1.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.56292.1.S1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710OsAffx.30013.5.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.44554.1.A1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30720NANA3+17463193..17464386retrotransposon protein, putative, unclassified
LOC_Os03g30730OsAffx.19695.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30730Os.57082.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30730OsAffx.29554.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25304.1.S1_at--471--5751Chr03:17441154..17441178 (25 bp)
GACGTCGCCGGGCTACTCCAGAACG
LOC_Os03g30690
OsAffx.25304.1.S1_at--1147--5791Chr03:17441205..17441229 (25 bp)
GACCGCAGCAACACCTTGAACCACA
LOC_Os03g30690
OsAffx.25304.1.S1_at--343--8991Chr03:17441221..17441245 (25 bp)
TGAACCACATGATCCGCAGCAGCAG
LOC_Os03g30690
OsAffx.25304.1.S1_at--54--4151Chr03:17441285..17441309 (25 bp)
CGCGTCGCAGGATTGGATGGATTAC
LOC_Os03g30690
OsAffx.25304.1.S1_at--1006--6231Chr03:17441300..17441324 (25 bp)
GATGGATTACCAGGAGCGCGTCGTC
LOC_Os03g30690
OsAffx.25304.1.S1_at--520--9371Chr03:17441323..17441347 (25 bp)
TCGAGTTGGGAAGTGACGCGGAGCT
LOC_Os03g30690
OsAffx.25304.1.S1_at--221--4591Chr03:17441391..17441415 (25 bp)
GCGCACCCGCTCTGCGTGGTCAGGT
LOC_Os03g30690
OsAffx.25304.1.S1_at--548--9491Chr03:17441401..17441425 (25 bp)
TCTGCGTGGTCAGGTCGCCGCAGCA
LOC_Os03g30690
OsAffx.25304.1.S1_at--318--1511Chr03:17441452..17441476 (25 bp)
AGCACCTGCGCAACGCCACTTGTGA
LOC_Os03g30690
OsAffx.25304.1.S1_at--752--3251Chr03:17441462..17441486 (25 bp)
CAACGCCACTTGTGAGCTCGACGGG
LOC_Os03g30690
OsAffx.25304.1.S1_at--607--7211Chr03:17441520..17441544 (25 bp)
GTCGAGAGCCAGGAGATCCTCGTGC
LOC_Os03g30690
Target Sequence 
GACGTCGCCGGGCTACTCCAGAACGCCCGCCTCCATCTCGGCGTCACCATCGACCGCAGCAACACCTTGAACCACATGAT
CCGCAGCAGCAGCTCTCTCGCCGATCGGCCGGCCGGCACTGGCAGCCCGGGCGCGTCGCAGGATTGGATGGATTACCAGG
AGCGCGTCGTCGAGTTGGGAAGTGACGCGGAGCTGAGGCTGTTCGCCGCCGTCAAGGCGGCCATGGACGCGCAGGGCGCG
CACCCGCTCTGCGTGGTCAGGTCGCCGCAGCACGAGGAGCACATGGAGGAGGCCAAGCAGCACCTGCGCAACGCCACTTG
TGAGCTCGACGGGGCGCTGGCGGCGCTGCTCGAGATGAGGCGCGACGTCGAGAGCCAGGAGATCCTCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis