Browse Element(s) Details


OsAffx.25308.1.S1_at

Description tigr:9631.m03026
TID=OsAffx.25308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3087011/11progesterone 5-beta-reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30810NANA3+17516764..17520999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30820NANA3+17522143..17522370NA
LOC_Os03g30830Os.53721.1.S1_at11/113+17524643..17527080expressed protein
LOC_Os03g30840Os.31503.1.S1_at11/113+17531188..17532026expressed protein
LOC_Os03g30840Os.31503.1.S1_x_at11/113+17531188..17532026expressed protein
LOC_Os03g30850OsAffx.13136.1.S1_at11/113+17536053..17536358hypothetical protein
LOC_Os03g30860NANA3+17538285..17542598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30870OsAffx.25308.1.S1_at11/113+17543105..17544111progesterone 5-beta-reductase, putative
LOC_Os03g30880NANA3+17552622..17553505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30890Os.26892.1.A1_at11/113+17554190..17558432D-mannose binding lectin family protein, expressed
LOC_Os03g30910OsAffx.13137.1.S1_at11/113+17560174..17562653NB-ARC domain containing protein, expressed
LOC_Os03g30920Os.52888.1.S1_at11/113+17566246..17568562F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25308.1.S1_at--895--9411Chr03:17543547..17543571 (25 bp)
TCGTGTTCGGCTTCTCCCCGCAGAG
LOC_Os03g30870
OsAffx.25308.1.S1_at--907--1371Chr03:17543568..17543592 (25 bp)
AGAGCGCCATGAACGTGGTGTGCAC
LOC_Os03g30870
OsAffx.25308.1.S1_at--103--8631Chr03:17543583..17543607 (25 bp)
TGGTGTGCACCCTCTGCGTGTACGC
LOC_Os03g30870
OsAffx.25308.1.S1_at--1027--5891Chr03:17543914..17543938 (25 bp)
GAGCTCGACCAGGTGGCAAACTGGT
LOC_Os03g30870
OsAffx.25308.1.S1_at--898--6451Chr03:17543962..17543986 (25 bp)
GATAAGTGGGAGTTCCTGGACACCA
LOC_Os03g30870
OsAffx.25308.1.S1_at--672--3191Chr03:17543997..17544021 (25 bp)
CAAGGAGCACGGCTTCCTAGGCTTC
LOC_Os03g30870
OsAffx.25308.1.S1_at--674--4911Chr03:17544008..17544032 (25 bp)
GCTTCCTAGGCTTCCGCAACACGGT
LOC_Os03g30870
OsAffx.25308.1.S1_at--1152--4091Chr03:17544022..17544046 (25 bp)
CGCAACACGGTCAAGTCCTTCGGGA
LOC_Os03g30870
OsAffx.25308.1.S1_at--42--1131Chr03:17544035..17544059 (25 bp)
AGTCCTTCGGGACGTGGATCGACAA
LOC_Os03g30870
OsAffx.25308.1.S1_at--167--531Chr03:17544052..17544076 (25 bp)
ATCGACAAGCTGAGGCTCTACAAGA
LOC_Os03g30870
OsAffx.25308.1.S1_at--85--3251Chr03:17544057..17544081 (25 bp)
CAAGCTGAGGCTCTACAAGATTGTT
LOC_Os03g30870
Target Sequence 
TCGTGTTCGGCTTCTCCCCGCAGAGCGCCATGAACGTGGTGTGCACCCTCTGCGTGTACGCGGCCATCTGCCGCAAGGAG
GGAGGCAGGAAGCTCCGGTGGCCGGGGTCGCTCGGCGCGTGGGAAGGGTTCAGCAACGCGTCCGACGCGGACCTCGTCGC
GGAGCAGCACATCTGGGCGGCCGTCGACCCGGCGGCGAGGAACGAGGCGTACAACTGCAGCAACGGCGACGTTCGGGATG
GAGTGGTCGGGGTACGAGGGGGAGGAGAGCAGGGTGAGCCTGACGGAGGGGGCATCGTGAGGGAGGAGGGGCTGGTGGCG
GCGGCGGAGCTCGACCAGGTGGCAAACTGGTGGTTCGTGGACGCGCTGTTCATGGATAAGTGGGAGTTCCTGGACACCAT
GAACAAGAGCAAGGAGCACGGCTTCCTAGGCTTCCGCAACACGGTCAAGTCCTTCGGGACGTGGATCGACAAGCTGAGGC
TCTACAAGATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis