Browse Element(s) Details


OsAffx.25407.1.S1_at

Description tigr:9631.m03657
TID=OsAffx.25407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3812010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38082NANA3+21093587..21096368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38090NANA3+21099232..21099534hypothetical protein
LOC_Os03g38094OsAffx.9048.1.S1_at1/113+21100993..21103442hypothetical protein
LOC_Os03g38100NANA3+21109504..21111434Zinc knuckle family protein
LOC_Os03g38110NANA3+21112307..21113234hypothetical protein
LOC_Os03g38120Os.14492.1.S1_at10/113+21119584..21125389expressed protein
LOC_Os03g38120OsAffx.25407.1.S1_at10/113+21119584..21125389expressed protein
LOC_Os03g38130OsAffx.25408.1.S1_at11/113+21127669..21130463hypothetical protein
LOC_Os03g38130Os.7988.1.S1_s_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38130Os.18335.3.S1_x_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38130OsAffx.12973.1.S1_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38140OsAffx.3431.1.S1_at11/113+21132025..21133091hypothetical protein
LOC_Os03g38150OsAffx.25409.1.S1_at11/113+21134085..21134666hypothetical protein
LOC_Os03g38170OsAffx.13228.1.S1_at11/113+21145945..21153622expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25407.1.S1_at--756--4191NONE
CCCCACTATGCAATGGACCTAGGAA
NONE
OsAffx.25407.1.S1_at--773--3311Chr03:21124434..21124675 (25 bp)
CACTATGCAATGGACCTAGGAAATC
LOC_Os03g38120
OsAffx.25407.1.S1_at--1121--10111Chr03:21124431..21124453 (23 bp)
TATGCAATGGACCTAGGAAATCTGT
LOC_Os03g38120
OsAffx.25407.1.S1_at--364--5191Chr03:21124428..21124452 (25 bp)
GCAATGGACCTAGGAAATCTGTCAT
LOC_Os03g38120
OsAffx.25407.1.S1_at--909--8091Chr03:21124423..21124447 (25 bp)
GGACCTAGGAAATCTGTCATTACTA
LOC_Os03g38120
OsAffx.25407.1.S1_at--362--951Chr03:21124417..21124441 (25 bp)
AGGAAATCTGTCATTACTAGATGAA
LOC_Os03g38120
OsAffx.25407.1.S1_at--180--2032Chr05:17220959..17221073 (25 bp)
ACTAGATGAAACATTGTGGCAGCAC
NONE
OsAffx.25407.1.S1_at--683--10031Chr03:21124400..21124424 (25 bp)
TAGATGAAACATTGTGGCAGCACAT
LOC_Os03g38120
OsAffx.25407.1.S1_at--1031--6311Chr03:21124398..21124422 (25 bp)
GATGAAACATTGTGGCAGCACATAT
LOC_Os03g38120
OsAffx.25407.1.S1_at--1107--3591Chr03:21124391..21124415 (25 bp)
CATTGTGGCAGCACATATGCAACTA
LOC_Os03g38120
OsAffx.25407.1.S1_at--332--31Chr03:21124390..21124414 (25 bp)
ATTGTGGCAGCACATATGCAACTAT
LOC_Os03g38120
Target Sequence 
CCCCACTATGCAATGGACCTAGGAAATCTGTCATTACTAGATGAAACATTGTGGCAGCACATATGCAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis