Browse Element(s) Details


OsAffx.25413.1.S1_at

Description tigr:9631.m03686
TID=OsAffx.25413.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g213501/11cig3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21280Os.52609.1.S1_at2/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280OsAffx.22947.2.S1_x_at1/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_x_at2/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_at1/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.33601.3.S1_x_at3/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.49936.2.A1_at1/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21320OsAffx.5886.1.S1_at11/118+12704826..12705059hypothetical protein
LOC_Os08g21330Os.49203.1.S1_at11/118+12705751..12714144formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os08g21350Os.5878.1.S1_at10/118+12719182..12727478cig3, putative, expressed
LOC_Os08g21350OsAffx.25413.1.S1_at1/118+12719182..12727478cig3, putative, expressed
LOC_Os08g21360Os.45173.1.S1_x_at3/118+12731477..12739402retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21370NANA8+12744014..12746488retrotransposon protein, putative, unclassified
LOC_Os08g21380Os.52238.1.S1_at2/118+12749117..12755076retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25413.1.S1_at--175--3331NONE
CACTGAATTAAGTTTGCTGGGTGCA
NONE
OsAffx.25413.1.S1_at--233--2572Chr05:17712340..17712364 (25 bp)
AACTGGATAAATTTTCTGTGTGCTG
NONE
OsAffx.25413.1.S1_at--421--8572Chr05:17712343..17712367 (25 bp)
TGGATAAATTTTCTGTGTGCTGTAT
NONE
OsAffx.25413.1.S1_at--452--9472Chr05:17712354..17712378 (25 bp)
TCTGTGTGCTGTATTTTTCTACTTG
NONE
OsAffx.25413.1.S1_at--1057--5472Chr05:17712378..17712402 (25 bp)
GAACTAGTAATTTTCTGCACCTGTG
NONE
OsAffx.25413.1.S1_at--302--3713Chr05:17712381..17712405 (25 bp)
CTAGTAATTTTCTGCACCTGTGTTC
NONE
OsAffx.25413.1.S1_at--681--7072Chr05:17712384..17712408 (25 bp)
GTAATTTTCTGCACCTGTGTTCCCA
NONE
OsAffx.25413.1.S1_at--189--10392Chr05:17712388..17712412 (25 bp)
TTTTCTGCACCTGTGTTCCCACAAA
NONE
OsAffx.25413.1.S1_at--848--8672Chr05:17712399..17712423 (25 bp)
TGTGTTCCCACAAACCGGTGTGCTG
NONE
OsAffx.25413.1.S1_at--502--3292Chr05:17712407..17712431 (25 bp)
CACAAACCGGTGTGCTGCATTTGCA
NONE
OsAffx.25413.1.S1_at--856--2372Chr05:17712410..17712434 (25 bp)
AAACCGGTGTGCTGCATTTGCACAC
NONE
Target Sequence 
CACTGAATTAAGTTTGCTGGGTGCAGGTTTTTTTTTGCTGAGAGCAGCTGGCGAGAATTCTTTTGCTGAGAGTAGTTTTT
TGTTCAAAGTAGAGCCACTGCCATCATCCAGTGCACACGTGTGTGATCTATTAATAGATTTTAGCCATTTAATAGCAAGG
TTGCATTTTGATTAGACAACACCTTGAAGGGGATAACTAATATTTGTGCACAAGTGTTGTAACTTATGAATGTTATTACC
TGCCAAAACTCTGTGGGATCTAAATTGTGTCAGCAGAAGACATCTGAATATCAGACCATGTCGGTATACATTGATGGACT
AGGTTGACTCTGCCAATTGTTTGTGGCCACAATCTGGACCTATGATTTTCTAGGAAAATCCTAAATATACTTGAACTGGA
TAAATTTTCTGTGTGCTGTATTTTTCTACTTGAACTAGTAATTTTCTGCACCTGTGTTCCCACAAACCGGTGTGCTGCAT
TTGCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis