Browse Element(s) Details


OsAffx.25421.1.S1_at

Description tigr:9631.m03711
TID=OsAffx.25421.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3868011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38640OsAffx.25420.1.S1_at11/113+21408175..21409215expressed protein
LOC_Os03g38650OsAffx.13237.1.S1_at11/113+21414694..21416201hypothetical protein
LOC_Os03g38660NANA3+21419323..21419778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38670NANA3+21421808..21422323hypothetical protein
LOC_Os03g38680OsAffx.25421.1.S1_at11/113+21429102..21430207hypothetical protein
LOC_Os03g38689OsAffx.17693.1.S1_at9/113+21432145..21434644hypothetical protein
LOC_Os03g38700OsAffx.17694.1.S1_x_at11/113+21437450..21438141tropinone reductase homolog At1g07440, putative
LOC_Os03g38700OsAffx.17694.1.S1_at11/113+21437450..21438141tropinone reductase homolog At1g07440, putative
LOC_Os03g38710OsAffx.25423.2.S1_x_at10/113+21438478..21441640Protein kinase domain containing protein
LOC_Os03g38710Os.43946.3.S1_x_at7/113+21438478..21441640Protein kinase domain containing protein
LOC_Os03g38720OsAffx.6272.1.S1_at11/113+21444889..21449811Proteasome maturation factor UMP1 family protein
LOC_Os03g38730Os.11929.1.S1_at11/113+21452687..21455242peroxisomal membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25421.1.S1_at--113--4692Chr09:8620679..8620703 (25 bp)
GCGGATGCTTCTCCGCAGCCGTCGA
NONE
OsAffx.25421.1.S1_at--1087--931Chr03:21429390..21429414 (25 bp)
AGGCAATTATTGAAGATGTGGAGAA
LOC_Os03g38680
OsAffx.25421.1.S1_at--196--6471Chr03:21429347..21429367 (21 bp)
GATAGAAATGCGCTCAACCGGCTGT
LOC_Os03g38680
OsAffx.25421.1.S1_at--234--10031Chr03:21429261..21429365 (25 bp)
TAGAAATGCGCTCAACCGGCTGTTG
LOC_Os03g38680
OsAffx.25421.1.S1_at--766--351Chr03:21429202..21429226 (25 bp)
ATAAGCTAGTGTTTGGATGTCATGT
LOC_Os03g38680
OsAffx.25421.1.S1_at--242--4871Chr03:21429198..21429222 (25 bp)
GCTAGTGTTTGGATGTCATGTAGTT
LOC_Os03g38680
OsAffx.25421.1.S1_at--250--9631Chr03:21429183..21429207 (25 bp)
TCATGTAGTTGAGTTATTTGCTGCA
LOC_Os03g38680
OsAffx.25421.1.S1_at--939--8891Chr03:21429174..21429198 (25 bp)
TGAGTTATTTGCTGCATTCAGTGCA
LOC_Os03g38680
OsAffx.25421.1.S1_at--178--4951Chr03:21429161..21429185 (25 bp)
GCATTCAGTGCAGTTGGGATATGGA
LOC_Os03g38680
OsAffx.25421.1.S1_at--1150--5551Chr03:21429138..21429162 (25 bp)
GAAAGCTGGAAGAGATGCTCCACAT
LOC_Os03g38680
OsAffx.25421.1.S1_at--828--8511Chr03:21429132..21429156 (25 bp)
TGGAAGAGATGCTCCACATAAGGAT
LOC_Os03g38680
Target Sequence 
GCGGATGCTTCTCCGCAGCCGTCGACCCTTCTCCACCATCAGCGCCACGGACGAGGCCAACATCCTCAAAGAACTTGATG
AATTGAAGACGAAGACGAAGAAGGCAATTATTGAAGATGTGGAGAAGGTAAAAAGGCTGGAGAATGAAGATAGAAATGCG
CTCAACCGGCTGTTGACTTCCTGCGGGATGCCCAGGGGTGCATTTCGAGATAAGCTAGTGTTTGGATGTCATGTAGTTGA
GTTATTTGCTGCATTCAGTGCAGTTGGGATATGGAAAGCTGGAAGAGATGCTCCACATAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis