Browse Element(s) Details


OsAffx.25423.2.S1_x_at

Description tigr:9637.m01166
TID=OsAffx.25423.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3871010/11Protein kinase domain containing protein
LOC_Os09g1458010/11Protein kinase domain containing protein
LOC_Os03g162606/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38650OsAffx.13237.1.S1_at11/113+21414694..21416201hypothetical protein
LOC_Os03g38660NANA3+21419323..21419778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38670NANA3+21421808..21422323hypothetical protein
LOC_Os03g38680OsAffx.25421.1.S1_at11/113+21429102..21430207hypothetical protein
LOC_Os03g38689OsAffx.17693.1.S1_at9/113+21432145..21434644hypothetical protein
LOC_Os03g38700OsAffx.17694.1.S1_x_at11/113+21437450..21438141tropinone reductase homolog At1g07440, putative
LOC_Os03g38700OsAffx.17694.1.S1_at11/113+21437450..21438141tropinone reductase homolog At1g07440, putative
LOC_Os03g38710OsAffx.25423.2.S1_x_at10/113+21438478..21441640Protein kinase domain containing protein
LOC_Os03g38710Os.43946.3.S1_x_at7/113+21438478..21441640Protein kinase domain containing protein
LOC_Os03g38720OsAffx.6272.1.S1_at11/113+21444889..21449811Proteasome maturation factor UMP1 family protein
LOC_Os03g38730Os.11929.1.S1_at11/113+21452687..21455242peroxisomal membrane protein, putative, expressed
LOC_Os03g38740Os.50406.1.S1_x_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38740Os.28186.1.S1_s_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38740Os.28186.2.S1_s_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25423.2.S1_x_at--460--7674Chr02:28274339..28274359 (21 bp)
GGGTTTGGCCTATCTACACGATGAC
NONE
OsAffx.25423.2.S1_x_at--1009--6793Chr09:8630636..8630816 (25 bp)
GTTTTGAGCCCAAGGTTGCAGATTT
LOC_Os09g14580
OsAffx.25423.2.S1_x_at--920--1172Chr09:8630418..8630441 (24 bp)
AGTACATTGCTCCAGAGTTCCTGTC
LOC_Os09g14580
OsAffx.25423.2.S1_x_at--651--1673Chr09:8630372..8630396 (25 bp)
AGCCGATGTCTTTGCTTTTGGTGTC
LOC_Os09g14580
OsAffx.25423.2.S1_x_at--331--7753Chr09:8630353..8630377 (25 bp)
GGTGTCGTCCTCTTGGAACTGATAA
LOC_Os09g14580
OsAffx.25423.2.S1_x_at--249--2953Chr09:8630324..8630348 (25 bp)
AAGGCTGCCGGTTCAGTCATCTGAG
LOC_Os09g14580
OsAffx.25423.2.S1_x_at--522--5652Chr09:8630293..8630314 (22 bp)
GACAGCACGTTAGTTGGTTGGGCAA
LOC_Os09g14580
OsAffx.25423.2.S1_x_at--754--10792Chr09:8630127..8630148 (22 bp)
TTGGGCAAAACCCTTGATTTCAGAA
LOC_Os09g14580
OsAffx.25423.2.S1_x_at--877--2993Chr09:8630025..8630049 (25 bp)
AATGATGGAGTGTGCCGCCGCTGCC
LOC_Os09g14580
OsAffx.25423.2.S1_x_at--637--5352Chr09:8629712..8629736 (25 bp)
GAAGATACCTACAGTTCCATCATGG
LOC_Os09g14580
OsAffx.25423.2.S1_x_at--561--9231NONE
TCCATCATGGAATCGGGCTTACCGC
NONE
Target Sequence 
GGGTTTGGCCTATCTACACGATGACTGTTCTCCTAAAATTATACATCGTGATGTCAAGGCATCCAATATTCTTCTGGATC
ATGGTTTTGAGCCCAAGGTTGCAGATTTTGGTCTAGCAAAGTACATTGCTCCAGAGTTCCTGTCTAGCGGGAAGCTTACT
GACAAAGCCGATGTCTTTGCTTTTGGTGTCGTCCTCTTGGAACTGATAACTGGAAGGCTGCCGGTTCAGTCATCTGAGTC
TTACATGGACAGCACGTTAGTTGGTTGGGCAAAACCCTTGATTTCAGAAGCTATGGAGGAAGGCAACTTTGATATCCTTG
TTGATCCGGATATTGGAGATGATTATGATGAAAACAAAATGATGCGAATGATGGAGTGTGCCGCCGCTGCCGTGCGCCAA
TCAGCACATCTGCGTCCATCCATGGTTCAGATCCTGAAGCACTTGCAAGGACAAACGCATGGAGAAGATCTAAACTCTAT
ATTTAGGACTACGTACGCAGAAGATACCTACAGTTCCATCATGGAATCGGGCTTACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25423.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis