Browse Element(s) Details


OsAffx.25437.1.S1_at

Description tigr:9631.m03794
TID=OsAffx.25437.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3951011/11hypothetical protein
LOC_Os05g500703/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g066802/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g349301/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39450NANA3+21876208..21881586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39460NANA3+21882439..21883104hypothetical protein
LOC_Os03g39470Os.45173.1.S1_x_at3/113+21884135..21886004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39470Os.54151.1.S1_x_at2/113+21884135..21886004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39490NANA3+21888344..21889365retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39500OsAffx.22699.1.S1_x_at2/113+21891825..21896428retrotransposon protein, putative, unclassified
LOC_Os03g39510OsAffx.25437.1.S1_at11/113+21898927..21899253hypothetical protein
LOC_Os03g39520OsAffx.3446.1.S1_at11/113+21905101..21907689pentatricopeptide, putative
LOC_Os03g39530NANA3+21909742..21911084hypothetical protein
LOC_Os03g39540OsAffx.25438.1.S1_at11/113+21914560..21915117Cytochrome P450 71D8, putative
LOC_Os03g39550OsAffx.3447.1.S1_at11/113+21917842..21918595hypothetical protein
LOC_Os03g39560Os.49291.1.S1_at3/113+21921301..21922242retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25437.1.S1_at--677--6331Chr03:21899005..21899029 (25 bp)
GATGCGGGGGTGACACTATGTTACC
LOC_Os03g39510
OsAffx.25437.1.S1_at--942--4171Chr03:21899029..21899053 (25 bp)
CCCATGCTCGGAGGGAACAACTATG
LOC_Os03g39510
OsAffx.25437.1.S1_at--1074--591Chr03:21899032..21899056 (25 bp)
ATGCTCGGAGGGAACAACTATGGTG
LOC_Os03g39510
OsAffx.25437.1.S1_at--985--3731Chr03:21899035..21899059 (25 bp)
CTCGGAGGGAACAACTATGGTGTTT
LOC_Os03g39510
OsAffx.25437.1.S1_at--82--2211Chr03:21899045..21899069 (25 bp)
ACAACTATGGTGTTTGGGCGGTGAA
LOC_Os03g39510
OsAffx.25437.1.S1_at--38--3271Chr03:21899046..21899070 (25 bp)
CAACTATGGTGTTTGGGCGGTGAAA
LOC_Os03g39510
OsAffx.25437.1.S1_at--80--7352Chr03:21899087..21899111 (25 bp)
GTGCACAAGGTGTGTGGGCTGCCGT
LOC_Os03g39510
OsAffx.25437.1.S1_at--191--4251Chr03:21899108..21899132 (25 bp)
CCGTGGAGGGCGATGTGTGGGCTGC
LOC_Os03g39510
OsAffx.25437.1.S1_at--785--4051Chr03:21899118..21899142 (25 bp)
CGATGTGTGGGCTGCCGTGGAAGGC
LOC_Os03g39510
OsAffx.25437.1.S1_at--234--8714Chr03:21899187..21899211 (25 bp)
TGTCCAAGCTGTGCCATATCCGAGA
LOC_Os03g39510
OsAffx.25437.1.S1_at--379--9214Chr05:22603120..22603191 (25 bp)
TCCAAGCTGTGCCATATCCGAGAAG
NONE
Target Sequence 
GATGCGGGGGTGACACTATGTTACCCCATGCTCGGAGGGAACAACTATGGTGTTTGGGCGGTGAAAATGAAAATTTTCAT
GCGTGCACAAGGTGTGTGGGCTGCCGTGGAGGGCGATGTGTGGGCTGCCGTGGAAGGCGACGCGGCCGATGAGAAGATGG
ACCAAATGGCTCTCGTCACCATTGTCCAAGCTGTGCCATATCCGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis