Browse Element(s) Details


OsAffx.25467.1.S1_at

Description tigr:9631.m03970
TID=OsAffx.25467.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4129011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41229Os.14571.1.S1_s_at11/113+22884928..22891752expressed protein
LOC_Os03g41229Os.14571.1.S1_at11/113+22884928..22891752expressed protein
LOC_Os03g41229OsAffx.19804.1.S1_at1/113+22884928..22891752expressed protein
LOC_Os03g41250NANA3+22895563..22896420hypothetical protein
LOC_Os03g41260NANA3+22899065..22899349hypothetical protein
LOC_Os03g41280Os.53984.1.S1_at11/113+22902150..22905189expressed protein
LOC_Os03g41290OsAffx.25467.1.S1_at11/113+22913673..22914563hypothetical protein
LOC_Os03g41300OsAffx.3471.1.S1_at7/113+22915528..22921768hypothetical protein
LOC_Os03g41300OsAffx.29724.3.S1_x_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41300OsAffx.29724.6.S1_x_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41300Os.37227.1.S1_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41310NANA3+22923863..22924108hypothetical protein
LOC_Os03g41320NANA3+22926099..22926344expressed protein
LOC_Os03g41330OsAffx.13282.1.S1_s_at11/113+22931641..22934544LOB domain protein 40, putative, expressed
LOC_Os03g41339NANA3+22939368..22939835hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25467.1.S1_at--925--1071Chr03:22913979..22914003 (25 bp)
AGTGGAGGTTGGACCACGTCTGCAT
LOC_Os03g41290
OsAffx.25467.1.S1_at--547--7831Chr03:22914124..22914148 (25 bp)
GGTACGGCCGTCTCCTAGTTATAGA
LOC_Os03g41290
OsAffx.25467.1.S1_at--63--10031Chr03:22914145..22914169 (25 bp)
TAGACAGCGACGTCCTGTCGGTGAT
LOC_Os03g41290
OsAffx.25467.1.S1_at--188--9411Chr03:22914217..22914241 (25 bp)
TCGTCATGGCGTCCCCGGAGAACGA
LOC_Os03g41290
OsAffx.25467.1.S1_at--894--2091Chr03:22914268..22914292 (25 bp)
ACATGCTCTCCCTGTGGGCGAGGGA
LOC_Os03g41290
OsAffx.25467.1.S1_at--833--9131Chr03:22914334..22914358 (25 bp)
TGCGGCGCAGCGTGATCGATCTCAA
LOC_Os03g41290
OsAffx.25467.1.S1_at--170--4671Chr03:22914343..22914367 (25 bp)
GCGTGATCGATCTCAAACCGGTGCT
LOC_Os03g41290
OsAffx.25467.1.S1_at--548--9291Chr03:22914367..22914391 (25 bp)
TCCCGTGGCCGATCGGGAAGCCCAA
LOC_Os03g41290
OsAffx.25467.1.S1_at--287--10411Chr03:22914411..22914435 (25 bp)
TTGGCTGTAGTTGACGAAGACCCCG
LOC_Os03g41290
OsAffx.25467.1.S1_at--791--5351Chr03:22914426..22914450 (25 bp)
GAAGACCCCGATGTCATCTTCGTGG
LOC_Os03g41290
OsAffx.25467.1.S1_at--289--8491Chr03:22914496..22914520 (25 bp)
TGGCTCGCTGCGCATCAGGAAAGTA
LOC_Os03g41290
Target Sequence 
AGTGGAGGTTGGACCACGTCTGCATCCACCTCGGCTCCGAGCTGGAGCCTGGAGGGGTACTACCTCGAGGACGACCGGCC
CGCCGCCCACGTCGTCGGCGACTCGCTCTACTTCGTCGGCAAGTCCGGCGTCCTCCTGCGGTACCGGTACGGCCGTCTCC
TAGTTATAGACAGCGACGTCCTGTCGGTGATCCAGCCGCCGCCGGACGCCAAGCGACGCCTCCGTCTCGGCTACACCGTC
GTCATGGCGTCCCCGGAGAACGAGCTGTGGATGGGGATTCTGCACCGTCACATGCTCTCCCTGTGGGCGAGGGAGGAGGA
GGACGACGCCGCCGCCGCCGCCAACGCCGGGTGGGTGCGGCGCAGCGTGATCGATCTCAAACCGGTGCTCCCGTGGCCGA
TCGGGAAGCCCAAGGGCAAGGAGCGAGCGTGTTTGGCTGTAGTTGACGAAGACCCCGATGTCATCTTCGTGGGCACGGAG
GAAGACGACGGTGTCTTCGCCGTGGAGCTCGAGTCGCTGGCTCGCTGCGCATCAGGAAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis