Browse Element(s) Details


Os.14571.1.S1_s_at

Description gb:AK071245.1
DB_XREF= gi:32981268
TID=Os.14571.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086B22, full insert sequence.
FL= gb:AK071245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4122911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41190Os.45976.1.S1_at5/113+22861252..22864563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g41190Os.45976.1.S1_x_at2/113+22861252..22864563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g41200Os.11349.1.S1_at11/113+22865946..22873148transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g41200Os.11685.1.S1_at11/113+22865946..22873148transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g41200OsAffx.19758.1.S1_at1/113+22865946..22873148transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g41210OsAffx.10222.1.S1_x_at2/113+22873337..22877464Zinc knuckle family protein
LOC_Os03g41210Os.45902.1.A1_x_at1/113+22873337..22877464Zinc knuckle family protein
LOC_Os03g41210OsAffx.10222.1.S1_at1/113+22873337..22877464Zinc knuckle family protein
LOC_Os03g41229Os.14571.1.S1_s_at11/113+22884928..22891752expressed protein
LOC_Os03g41229Os.14571.1.S1_at11/113+22884928..22891752expressed protein
LOC_Os03g41229OsAffx.19804.1.S1_at1/113+22884928..22891752expressed protein
LOC_Os03g41250NANA3+22895563..22896420hypothetical protein
LOC_Os03g41260NANA3+22899065..22899349hypothetical protein
LOC_Os03g41280Os.53984.1.S1_at11/113+22902150..22905189expressed protein
LOC_Os03g41290OsAffx.25467.1.S1_at11/113+22913673..22914563hypothetical protein
LOC_Os03g41300OsAffx.3471.1.S1_at7/113+22915528..22921768hypothetical protein
LOC_Os03g41300OsAffx.29724.3.S1_x_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41300OsAffx.29724.6.S1_x_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41300Os.37227.1.S1_at1/113+22915528..22921768hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14571.1.S1_s_at--768--1151Chr03:22891191..22891215 (25 bp)
AGTCAAGGCTGAGAACTGCAATACT
LOC_Os03g41229
Os.14571.1.S1_s_at--1157--3071Chr03:22891217..22891241 (25 bp)
AATCAATATATCTTCCTGTGGAGGA
LOC_Os03g41229
Os.14571.1.S1_s_at--1079--5971Chr03:22891249..22891359 (25 bp)
GAGAAATGCTTCTACCAGTGGCCAA
LOC_Os03g41229
Os.14571.1.S1_s_at--661--7551Chr03:22891352..22891376 (25 bp)
GTGGCCAATTTCACGGTACTATTAG
LOC_Os03g41229
Os.14571.1.S1_s_at--679--7831Chr03:22891366..22891390 (25 bp)
GGTACTATTAGGATGGACGGCTCTA
LOC_Os03g41229
Os.14571.1.S1_s_at--1121--5731Chr03:22891381..22891405 (25 bp)
GACGGCTCTAAGGACCTGTTTGTCA
LOC_Os03g41229
Os.14571.1.S1_s_at--691--10811Chr03:22891400..22891424 (25 bp)
TTGTCACAGCTCCAGTCCAGCCGGA
LOC_Os03g41229
Os.14571.1.S1_s_at--1106--1671Chr03:22891418..22891442 (25 bp)
AGCCGGACAGTCCACCTAAAATGGG
LOC_Os03g41229
Os.14571.1.S1_s_at--423--1391Chr03:22891595..22891619 (25 bp)
AGACCTGTCACTACTGTAGCGGATT
LOC_Os03g41229
Os.14571.1.S1_s_at--1113--3951Chr03:22891614..22891638 (25 bp)
CGGATTCGACTATGATTTAGGGCTA
LOC_Os03g41229
Os.14571.1.S1_s_at--257--10451Chr03:22891630..22891654 (25 bp)
TTAGGGCTAGTGGACATTTCATGTT
LOC_Os03g41229
Target Sequence 
AGTCAAGGCTGAGAACTGCAATACTCAATCAATATATCTTCCTGTGGAGGAGGCTATCGAGAAATGCTTCTACCAGTGGC
CAATTTCACGGTACTATTAGGATGGACGGCTCTAAGGACCTGTTTGTCACAGCTCCAGTCCAGCCGGACAGTCCACCTAA
AATGGGAGTGGAGCTAGGTGGGGCGCTCTCACAAAATGAACTAGAGAGGTGGAGGAGCTGAATTTAGACTACTCCACAAC
TCTACTTCAAACTCAACTCCTGAACTACTTCAAACTCAACTCCTGAAGTTAAATTTAGGAGTTGAAGCTNTACCAAATAG
ACCTGTCACTACTGTAGCGGATTCGACTATGATTTAGGGCTAGTGGACATTTCATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14571.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis