Browse Element(s) Details


Os.11685.1.S1_at

Description gb:AK063928.1
DB_XREF= gi:32973946
TID=Os.11685.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C09, full insert sequence.
FL= gb:AK063928.1 gb:AK099347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4120011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41170Os.53434.1.S1_at11/113+22847035..22850167expressed protein
LOC_Os03g41180Os.46306.1.S1_x_at8/113+22855491..22858586transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g41190Os.45976.1.S1_at5/113+22861252..22864563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g41190Os.45976.1.S1_x_at2/113+22861252..22864563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g41200Os.11349.1.S1_at11/113+22865946..22873148transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g41200Os.11685.1.S1_at11/113+22865946..22873148transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g41200OsAffx.19758.1.S1_at1/113+22865946..22873148transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g41210OsAffx.10222.1.S1_x_at2/113+22873337..22877464Zinc knuckle family protein
LOC_Os03g41210Os.45902.1.A1_x_at1/113+22873337..22877464Zinc knuckle family protein
LOC_Os03g41210OsAffx.10222.1.S1_at1/113+22873337..22877464Zinc knuckle family protein
LOC_Os03g41229Os.14571.1.S1_s_at11/113+22884928..22891752expressed protein
LOC_Os03g41229Os.14571.1.S1_at11/113+22884928..22891752expressed protein
LOC_Os03g41229OsAffx.19804.1.S1_at1/113+22884928..22891752expressed protein
LOC_Os03g41250NANA3+22895563..22896420hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11685.1.S1_at--1065--8111Chr03:22866498..22866522 (25 bp)
GGACTCAAGCTCAGTTCTAGGCACT
LOC_Os03g41200
Os.11685.1.S1_at--706--5351Chr03:22866440..22866464 (25 bp)
GAAGATGCTCCCACAATAGATCATG
LOC_Os03g41200
Os.11685.1.S1_at--238--5611Chr03:22866260..22866284 (25 bp)
GACAACTTGAATAGCCTTCCAGGTT
LOC_Os03g41200
Os.11685.1.S1_at--965--9691Chr03:22866225..22866249 (25 bp)
TCACATCTCTTTCTACTATCACTAT
LOC_Os03g41200
Os.11685.1.S1_at--608--7911Chr03:22866198..22866222 (25 bp)
GGTTGCTAATCCACATATTGCTAGA
LOC_Os03g41200
Os.11685.1.S1_at--957--51Chr03:22866182..22866206 (25 bp)
ATTGCTAGAGCTTTCAACGGTCTTC
LOC_Os03g41200
Os.11685.1.S1_at--87--9711Chr03:22866169..22866193 (25 bp)
TCAACGGTCTTCCATTTGCGAACAA
LOC_Os03g41200
Os.11685.1.S1_at--962--391Chr03:22866122..22866146 (25 bp)
ATCAGCGAGAAGTTTCCCGGTGCTA
LOC_Os03g41200
Os.11685.1.S1_at--388--7771Chr03:22866104..22866128 (25 bp)
GGTGCTATGTAGGATACCATCTTCA
LOC_Os03g41200
Os.11685.1.S1_at--426--6991Chr03:22866043..22866067 (25 bp)
GTACCCTCTCATTTTGTATTGTGTG
LOC_Os03g41200
Os.11685.1.S1_at--77--7471Chr03:22866023..22866047 (25 bp)
GTGTGTGCACCGTTAATTTGGGCTA
LOC_Os03g41200
Target Sequence 
GGACTCAAGCTCAGTTCTAGGCACTGAAGATGTCGAGGGTACAGAGAATGAAGTGAATGAAGATGCTCCCACAATAGATC
ATGATGAGAGATCATCGGCTAGCAAGCCCAAGAGACAAAAGACATATGCACATGACGATGATGGTTTGGTTGGTGCATTT
GACAGAGCTAGTGACAAACTAGCAAATGCCATAATAAGGTCTAGCACAGTTGGGAATGAACTACCTGATGATCTATGGGA
CAACTTGAATAGCCTTCCAGGTTTTGAGCAACATCACATCTCTTTCTACTATCACTATTTGGTTGCTAATCCACATATTG
CTAGAGCTTTCAACGGTCTTCCATTTGCGAACAAACTTGATTGGGTTGCTATGTACATCAGCGAGAAGTTTCCCGGTGCT
ATGTAGGATACCATCTTCATGGAAAGATTGGTTATTTCACTATTATGAACTATTTGTACCCTCTCATTTTGTATTGTGTG
TGCACCGTTAATTTGGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis