Browse Element(s) Details


OsAffx.25509.1.S1_at

Description tigr:9631.m04153
TID=OsAffx.25509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4314011/11hypothetical protein
LOC_Os02g441361/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43080OsAffx.13317.1.S1_at11/113+23989932..23990602hypothetical protein
LOC_Os03g43090Os.14491.2.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43090Os.47463.1.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43100Os.10266.1.S1_at11/113+24000382..24001487expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_s_at11/113+24003465..24008078expressed protein
LOC_Os03g43114Os.50212.1.S1_at11/113+24003465..24008078expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_at1/113+24003465..24008078expressed protein
LOC_Os03g43130Os.34588.2.S1_at1/113+24009763..24012841transposon protein, putative, unclassified
LOC_Os03g43140OsAffx.25509.1.S1_at11/113+24014481..24015525hypothetical protein
LOC_Os03g43150OsAffx.3496.1.S1_x_at11/113+24030486..24030842retrotransposon protein, putative, unclassified
LOC_Os03g43150OsAffx.21269.1.S1_x_at1/113+24030486..24030842retrotransposon protein, putative, unclassified
LOC_Os03g43160Os.51869.1.S1_at2/113+24033489..24037024retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g43169NANA3+24038247..24038749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g43180OsAffx.3496.1.S1_x_at1/113+24039272..24039595retrotransposon protein, putative, unclassified
LOC_Os03g43180OsAffx.21269.1.S1_x_at1/113+24039272..24039595retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25509.1.S1_at--27--4911Chr03:24014512..24014536 (25 bp)
GCTTCTCCGGAGAGCTCGACGATGA
LOC_Os03g43140
OsAffx.25509.1.S1_at--974--1871Chr03:24014530..24014554 (25 bp)
ACGATGACCGCCATGTTCTGGAGGA
LOC_Os03g43140
OsAffx.25509.1.S1_at--887--9391Chr03:24014608..24014632 (25 bp)
TCGTCATCGAAGCTTCATGGCCAGC
LOC_Os03g43140
OsAffx.25509.1.S1_at--1018--7611Chr03:24014714..24014738 (25 bp)
GGGAAGCCAGACTCGATCCGTGCCG
LOC_Os03g43140
OsAffx.25509.1.S1_at--619--4411Chr03:24014746..24014770 (25 bp)
GCCACCAAGACCTTGTCGACATGGG
LOC_Os03g43140
OsAffx.25509.1.S1_at--959--11Chr03:24014772..24015226 (25 bp)
ATTGGCGGTGGTTATGGCCACACGA
LOC_Os03g43140
OsAffx.25509.1.S1_at--228--2191Chr03:24015248..24015272 (25 bp)
ACACATGTTTCAAGGCTCAGGTCGT
LOC_Os03g43140
OsAffx.25509.1.S1_at--3--5491Chr03:24015297..24015321 (25 bp)
GAACTTGGGTGGAAGTCCCGACCAT
LOC_Os03g43140
OsAffx.25509.1.S1_at--93--7771Chr03:24015325..24015349 (25 bp)
GGTGAGTTTCAACCTGTTCCTAATC
LOC_Os03g43140
OsAffx.25509.1.S1_at--313--5952Chr03:24015375..24015399 (25 bp)
GAGAGCAGGTTTCCGGAACTTTTGC
LOC_Os03g43140
OsAffx.25509.1.S1_at--969--5471Chr03:24015390..24015414 (25 bp)
GAACTTTTGCCTTCGACATCCTGCA
LOC_Os03g43140
Target Sequence 
GCTTCTCCGGAGAGCTCGACGATGACCGCCATGTTCTGGAGGATGCTCACTACAAGGAAGGCAGGGTGGCCATGACGCGC
CGGTGTCCCAATCTAGTCGTCATCGAAGCTTCATGGCCAGCCTCGAGGTCGTTGCCAGATGCGGAGGGGAAAGTGGCAGC
GGCGGTGGCAGGGAGGAGGATTGAAAGCTCGTGGAGGGGTTGGGGAAGCCAGACTCGATCCGTGCCGCACGCACGCCACC
AAGACCTTGTCGACATGGGGATTGGCGGTGGTTATGGCCACACGAAGGATGGTGGAACGGCGTGTAACACATGTTTCAAG
GCTCAGGTCGTGAAGGGTATTGAGATGGTGACGGTGAACTTGGGTGGAAGTCCCGACCATATAGGTGAGTTTCAACCTGT
TCCTAATCATAGTTATAGTGAACCGGTGATCGGGAGAGCAGGTTTCCGGAACTTTTGCCTTCGACATCCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis