Browse Element(s) Details


OsAffx.25531.1.S1_at

Description tigr:9631.m04258
TID=OsAffx.25531.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4414011/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44070NANA3+24722025..24733234transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44100OsAffx.13338.1.S1_at9/113+24734710..24737183phosphonate metabolism protein, putative
LOC_Os03g44110OsAffx.25532.1.S1_at11/113+24738157..24740896phosphonate metabolism protein, putative
LOC_Os03g44130OsAffx.617.1.A1_at11/113+24746867..24748716expressed protein
LOC_Os03g44130OsAffx.617.1.A1_x_at11/113+24746867..24748716expressed protein
LOC_Os03g44130Os.31879.1.S1_at9/113+24746867..24748716expressed protein
LOC_Os03g44140OsAffx.25531.1.S1_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.1.S1_x_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.2.S1_x_at1/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44150Os.18830.1.S2_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44150Os.18830.1.S1_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44159OsAffx.3509.1.S1_at7/113+24776997..24778157hypothetical protein
LOC_Os03g44170Os.56896.1.S1_at10/113+24779575..24780776Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g44180OsAffx.24252.1.S1_x_at2/113+24783093..24783852hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25531.1.S1_at--172--9351Chr03:24752424..24752448 (25 bp)
TCGCGGAGCTCATCACCCGCAAGAA
LOC_Os03g44140
OsAffx.25531.1.S1_at--325--1451Chr03:24752355..24752379 (25 bp)
AGAAGCGGTCGCTGTCGTCCACGTT
LOC_Os03g44140
OsAffx.25531.1.S1_at--877--3771Chr03:24752305..24752329 (25 bp)
CTCTGGAGAGTGGTGGACCGCGACA
LOC_Os03g44140
OsAffx.25531.1.S1_at--718--8531Chr03:24752292..24752316 (25 bp)
TGGACCGCGACATCATGGACGGCGA
LOC_Os03g44140
OsAffx.25531.1.S1_at--94--8551Chr03:24752139..24752163 (25 bp)
TGGAGGCGGCCGCAGGTGTTGAGGT
LOC_Os03g44140
OsAffx.25531.1.S1_at--931--6111Chr03:24752119..24752143 (25 bp)
GAGGTGGTGGATGGCTTCAATGGAG
LOC_Os03g44140
OsAffx.25531.1.S1_at--888--8351Chr03:24752082..24752106 (25 bp)
GGCGGCATGGGCATCTGGACACCAC
LOC_Os03g44140
OsAffx.25531.1.S1_at--957--791Chr03:24752076..24752100 (25 bp)
ATGGGCATCTGGACACCACGACGAC
LOC_Os03g44140
OsAffx.25531.1.S1_at--199--5771Chr03:24752048..24752072 (25 bp)
GACGACGTCTTATTACCAGAGCATG
LOC_Os03g44140
OsAffx.25531.1.S1_at--106--5771Chr03:24752045..24752069 (25 bp)
GACGTCTTATTACCAGAGCATGGAG
LOC_Os03g44140
OsAffx.25531.1.S1_at--1000--131Chr03:24752037..24752061 (25 bp)
ATTACCAGAGCATGGAGACGGACAA
LOC_Os03g44140
Target Sequence 
TCGCGGAGCTCATCACCCGCAAGAAGGCGGTGTACGAAGACGACGGCGGCGGCGGCGGAGGCTCCGGCGAGAAGCGGTCG
CTGTCGTCCACGTTCCTCGCGGCCTCCAGCCGGGGTGAGCTCTGGAGAGTGGTGGACCGCGACATCATGGACGGCGACGA
CGTCGACGCCGTGGTCCGGGAGCTCGCGCGGGTCGCCGAGGAGTGCATGGGAGCGAGAGGCGAGGAGAGGCCGGCGATGA
AGGAGGTGGCGGAGCGGCTGCAGGTGCTGAGGAGGGTGGAGATGATGGAGGCGGCCGCAGGTGTTGAGGTGGTGGATGGC
TTCAATGGAGGAGGATTAGTTGGGCGGCATGGGCATCTGGACACCACGACGACGACGACGACGTCTTATTACCAGAGCAT
GGAGACGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis