Browse Element(s) Details


OsAffx.25532.1.S1_at

Description tigr:9631.m04256
TID=OsAffx.25532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4411011/11phosphonate metabolism protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44050OsAffx.25531.2.S1_at11/113+24713458..24717694Protein kinase domain containing protein, expressed
LOC_Os03g44050OsAffx.25531.2.S1_x_at11/113+24713458..24717694Protein kinase domain containing protein, expressed
LOC_Os03g44050OsAffx.25531.1.S1_x_at2/113+24713458..24717694Protein kinase domain containing protein, expressed
LOC_Os03g44070NANA3+24722025..24733234transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44100OsAffx.13338.1.S1_at9/113+24734710..24737183phosphonate metabolism protein, putative
LOC_Os03g44110OsAffx.25532.1.S1_at11/113+24738157..24740896phosphonate metabolism protein, putative
LOC_Os03g44130OsAffx.617.1.A1_at11/113+24746867..24748716expressed protein
LOC_Os03g44130OsAffx.617.1.A1_x_at11/113+24746867..24748716expressed protein
LOC_Os03g44130Os.31879.1.S1_at9/113+24746867..24748716expressed protein
LOC_Os03g44140OsAffx.25531.1.S1_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.1.S1_x_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.2.S1_x_at1/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44150Os.18830.1.S2_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44150Os.18830.1.S1_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25532.1.S1_at--594--191Chr03:24739467..24739491 (25 bp)
ATATTTATCCGACATCTTGAGATTT
LOC_Os03g44110
OsAffx.25532.1.S1_at--477--5671Chr03:24739457..24739481 (25 bp)
GACATCTTGAGATTTTTACCTAAAA
LOC_Os03g44110
OsAffx.25532.1.S1_at--431--10451Chr03:24738965..24739466 (25 bp)
TTACCTAAAACTGAGCATGCCATTT
LOC_Os03g44110
OsAffx.25532.1.S1_at--914--4972Chr03:24738935..24738955 (21 bp)
GCATGCCATTTCAAAGTCTGGTGCT
LOC_Os03g44110
OsAffx.25532.1.S1_at--1109--171Chr03:24738928..24738952 (25 bp)
ATTTCAAAGTCTGGTGCTGGGCAAC
LOC_Os03g44110
OsAffx.25532.1.S1_at--666--3291Chr03:24738924..24738948 (25 bp)
CAAAGTCTGGTGCTGGGCAACTTGA
LOC_Os03g44110
OsAffx.25532.1.S1_at--649--2031Chr03:24738890..24738914 (25 bp)
ACTAGAAGCTAACAGTTTGCATGGG
LOC_Os03g44110
OsAffx.25532.1.S1_at--247--9132Chr03:24738489..24738513 (25 bp)
TGCTGTGAAGAGGATAAGCCCTAAG
LOC_Os03g44110
OsAffx.25532.1.S1_at--1137--6451Chr03:24738477..24738501 (25 bp)
GATAAGCCCTAAGAGAGCTTTGCTG
LOC_Os03g44110
OsAffx.25532.1.S1_at--340--1351Chr03:24738466..24738490 (25 bp)
AGAGAGCTTTGCTGACTGGAATGGC
LOC_Os03g44110
OsAffx.25532.1.S1_at--474--851Chr03:24738446..24738470 (25 bp)
ATGGCACATGAGATCGAATACTACA
LOC_Os03g44110
Target Sequence 
ATATTTATCCGACATCTTGAGATTTTTACCTAAAACTGAGCATGCCATTTCAAAGTCTGGTGCTGGGCAACTTGATCTTC
TTATACTAGAAGCTAACAGTTTGCATGGGGAGGCTCTTGATGCTGTGAAGAGGATAAGCCCTAAGAGAGCTTTGCTGACT
GGAATGGCACATGAGATCGAATACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis