Browse Element(s) Details


OsAffx.25573.1.S1_at

Description tigr:9631.m04474
TID=OsAffx.25573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4614011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46100Os.5503.2.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.5503.1.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.49642.1.S1_x_at7/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46110OsAffx.13376.1.S1_s_at11/113+26027787..26030746expressed protein
LOC_Os03g46120OsAffx.25572.1.S1_at11/113+26032915..26035358F-box domain containing protein
LOC_Os03g46130NANA3+26037960..26038328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46134OsAffx.16205.1.S1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46134Os.31535.1.A1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46140OsAffx.25573.1.S1_at11/113+26048006..26049494F-box domain containing protein
LOC_Os03g46150Os.50969.1.S1_x_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50969.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50796.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46170NANA3+26057015..26063594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46180OsAffx.13377.1.S1_at11/113+26069175..26070086Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46190Os.53913.1.S1_at11/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46190OsAffx.13378.1.S1_at10/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46200OsAffx.25574.2.S1_x_at11/113+26074117..26074728acetyltransferase, GNAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25573.1.S1_at--1157--7671Chr03:26048902..26048926 (25 bp)
GGGTATACTTAGCATCACTTGAGCA
LOC_Os03g46140
OsAffx.25573.1.S1_at--554--5951Chr03:26048922..26048946 (25 bp)
GAGCAAGAGCTGGACCTTCAACTTT
LOC_Os03g46140
OsAffx.25573.1.S1_at--611--9711Chr03:26048939..26048963 (25 bp)
TCAACTTTCGGTTTGGATCCTTAAT
LOC_Os03g46140
OsAffx.25573.1.S1_at--1023--2591Chr03:26049006..26049030 (25 bp)
AACCTTAAGCCCTTGTTGTCACGCT
LOC_Os03g46140
OsAffx.25573.1.S1_at--1055--1711Chr03:26049053..26049077 (25 bp)
ACCTTGGATACTTCACGATGTTAAC
LOC_Os03g46140
OsAffx.25573.1.S1_at--598--7551Chr03:26049105..26049129 (25 bp)
GGGCCGTGGTTCTACAATGTTACTT
LOC_Os03g46140
OsAffx.25573.1.S1_at--121--6891Chr03:26049253..26049277 (25 bp)
GTATTTCACTTCTTGGATTCCATCC
LOC_Os03g46140
OsAffx.25573.1.S1_at--740--7551Chr03:26049321..26049345 (25 bp)
GTGGCCTACCATTTAAACAGCTCAA
LOC_Os03g46140
OsAffx.25573.1.S1_at--351--1391Chr03:26049353..26049377 (25 bp)
AGACTTGGGCAGCATATTCCCTCAA
LOC_Os03g46140
OsAffx.25573.1.S1_at--404--9691Chr03:26049380..26049404 (25 bp)
TTTTAATCAGGTCTCGGAAGTCGGG
LOC_Os03g46140
OsAffx.25573.1.S1_at--851--8351Chr03:26049405..26049429 (25 bp)
GGCGGCATAGAAGCTTCTTTTCCAT
LOC_Os03g46140
Target Sequence 
GGGTATACTTAGCATCACTTGAGCAAGAGCTGGACCTTCAACTTTCGGTTTGGATCCTTAATGAGTCATGTGCTAAGGCC
AAATGGGTATTAAAACATAGAAACAACCTTAAGCCCTTGTTGTCACGCTGGGGATATCATCAAGTCAATGGACCTTGGAT
ACTTCACGATGTTAACTATGATCTCTATCGTAAAAATTTTGGTGGGCCGTGGTTCTACAATGTTACTTACGATGATCTCT
TACTAGAGGGTAACAATGAAGTGCCGGTGGAAGATAAATATGAATGGTACTCTGATAACGATGATGTTGATCATGATACA
CAAGATGGTGTTGAAGAGCAAAGTCATGTTAGTATTTCACTTCTTGGATTCCATCCTTATAGGGAAATTGTATTTTTGAG
TTTGTCATGCGAGAGAGGAGTGGCCTACCATTTAAACAGCTCAAAGATGCAAGACTTGGGCAGCATATTCCCTCAAAATT
TTAATCAGGTCTCGGAAGTCGGGGGCGGCATAGAAGCTTCTTTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis