Browse Element(s) Details


OsAffx.25584.1.S1_at

Description tigr:9631.m04536
TID=OsAffx.25584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g467108/11FYVE zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46660Os.21574.1.S1_a_at11/113+26356927..26359742Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g46674NANA3+26367389..26368943transposon protein, putative, unclassified
LOC_Os03g46690OsAffx.3534.1.S1_at11/113+26374411..26376763F-box domain containing protein
LOC_Os03g46710Os.50529.1.S1_x_at11/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46710OsAffx.25584.1.S1_at8/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46720OsAffx.25585.1.S1_at11/113+26389883..26391746F-box domain containing protein
LOC_Os03g46730Os.51760.1.S1_at11/113+26391945..26393507expressed protein
LOC_Os03g46730Os.51760.2.S1_at10/113+26391945..26393507expressed protein
LOC_Os03g46740Os.34369.1.S1_at11/113+26394467..26397972ABC transporter family protein, expressed
LOC_Os03g46750Os.16285.1.S1_a_at11/113+26398078..26400679mannosyltransferase family protein, putative, expressed
LOC_Os03g46760NANA3+26401404..26402936hypothetical protein
LOC_Os03g46770Os.46231.2.S1_x_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46231.1.S1_a_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46902.1.S1_x_at1/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46780OsAffx.25586.1.S1_at11/113+26411457..26413586hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25584.1.S1_at--488--6171Chr03:26387691..26387715 (25 bp)
GAGGATCTTCTTGATCCGCAGATCA
LOC_Os03g46710
OsAffx.25584.1.S1_at--1015--6371Chr03:26387703..26387727 (25 bp)
GATCCGCAGATCATGTCTGCCTTAA
LOC_Os03g46710
OsAffx.25584.1.S1_at--358--7171Chr03:26387717..26387741 (25 bp)
GTCTGCCTTAAAATCGATTGGTTGG
LOC_Os03g46710
OsAffx.25584.1.S1_at--1089--6111Chr03:26387741..26387765 (25 bp)
GAGTGATGCTGATCTGTCCGCGCAA
LOC_Os03g46710
OsAffx.25584.1.S1_at--490--3051Chr03:26387764..26387788 (25 bp)
AATCTTCTAACGCACAGCCTTCAAA
LOC_Os03g46710
OsAffx.25584.1.S1_at--1127--8231Chr03:26387798..26387822 (25 bp)
GGCAAAGCCAACTGTGGCAGCTACA
LOC_Os03g46710
OsAffx.25584.1.S1_at--487--5571Chr03:26387838..26387862 (25 bp)
GAGAAGACCCAGCTTGAGGAACATA
LOC_Os03g46710
OsAffx.25584.1.S1_at--586--8011Chr03:26387924..26387948 (25 bp)
GGAGGCCCTCCGATCAGCAAAGCGG
LOC_Os03g46710
OsAffx.25584.1.S1_at--1135--8271Chr03:26387963..26387987 (25 bp)
GGCATCACTTGCCTAATAAGTTGTC
NONE
OsAffx.25584.1.S1_at--1093--2811Chr03:26387980..26388004 (25 bp)
AAGTTGTCCAAAAGCTCGTCTTCAT
NONE
OsAffx.25584.1.S1_at--530--2691Chr03:26387991..26388015 (25 bp)
AAGCTCGTCTTCATAATCGTTTGAT
NONE
Target Sequence 
GAGGATCTTCTTGATCCGCAGATCATGTCTGCCTTAAAATCGATTGGTTGGAGTGATGCTGATCTGTCCGCGCAATCTTC
TAACGCACAGCCTTCAAAGAAAGCTGAGGCAAAGCCAACTGTGGCAGCTACAACCAAGCCTCAGAGTGAGAAGACCCAGC
TTGAGGAACATATTAAGGCTGAGAAACTGAAGGCTCTAAACTTGAAGCGTGAAGGGAAACAGACAGAGGCTCTGGAGGCC
CTCCGATCAGCAAAGCGGCTGGAGAAGAAGTTGGCATCACTTGCCTAATAAGTTGTCCAAAAGCTCGTCTTCATAATCGT
TTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis