Browse Element(s) Details


OsAffx.25616.4.S1_at

Description tigr:9631.m04664
TID=OsAffx.25616.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4792011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47870NANA3+27161183..27166403retrotransposon protein, putative, unclassified
LOC_Os03g47880NANA3+27168575..27169192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g47890Os.38395.5.S1_at2/113+27169377..27172506Transposable element protein, putative, MuDR
LOC_Os03g47896Os.54843.1.S1_at11/113+27175431..27176458Ribosome inactivating protein, expressed
LOC_Os03g47896Os.46801.2.S1_x_at1/113+27175431..27176458Ribosome inactivating protein, expressed
LOC_Os03g47902Os.41415.1.S1_at1/113+27177453..27178448hypothetical protein
LOC_Os03g47910NANA3+27182027..27182788expressed protein
LOC_Os03g47920OsAffx.25616.4.S1_at11/113+27184508..27188184hypothetical protein
LOC_Os03g47920OsAffx.21789.1.S1_at2/113+27184508..27188184hypothetical protein
LOC_Os03g47920OsAffx.25616.2.S1_x_at1/113+27184508..27188184hypothetical protein
LOC_Os03g47930Os.2860.1.S1_at11/113+27187647..27200141expressed protein
LOC_Os03g47940Os.12170.1.S1_at11/113+27201111..27205741GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25616.4.S1_at--521--4071Chr03:27185514..27185538 (25 bp)
CGAGCACGTAGAGGCCGTAGAAGTC
LOC_Os03g47920
OsAffx.25616.4.S1_at--956--6231Chr03:27185045..27185502 (25 bp)
GATGGCATCGCACCAAATCTGGAGA
LOC_Os03g47920
OsAffx.25616.4.S1_at--772--9911Chr03:27184987..27185011 (25 bp)
TACTGGGTGGACACTGCGACAGGCA
LOC_Os03g47920
OsAffx.25616.4.S1_at--672--2611Chr03:27184951..27184975 (25 bp)
AACCCGTTCGTTGACGAGCTGCACA
LOC_Os03g47920
OsAffx.25616.4.S1_at--461--10011Chr03:27184890..27184914 (25 bp)
TAGAACACGACGGAGACTGCCACGG
LOC_Os03g47920
OsAffx.25616.4.S1_at--24--8331Chr03:27184783..27184807 (25 bp)
GGCTCTGCAAGCGATGGTGTTACTA
LOC_Os03g47920
OsAffx.25616.4.S1_at--605--6231Chr03:27184771..27184795 (25 bp)
GATGGTGTTACTACCAAGGTCCCCA
LOC_Os03g47920
OsAffx.25616.4.S1_at--253--2891Chr03:27184756..27184780 (25 bp)
AAGGTCCCCATGCACACGCAGATTG
LOC_Os03g47920
OsAffx.25616.4.S1_at--699--2171Chr03:27184743..27184767 (25 bp)
ACACGCAGATTGATCCAGGGACCAA
LOC_Os03g47920
OsAffx.25616.4.S1_at--603--10611Chr03:27184585..27184609 (25 bp)
TTCGTAGAAGTCACCAGCCTGCGCA
LOC_Os03g47920
OsAffx.25616.4.S1_at--862--2051Chr03:27184554..27184578 (25 bp)
ACTTCTACGGCCTCTATGTGCTCGC
LOC_Os03g47920
Target Sequence 
CGAGCACGTAGAGGCCGTAGAAGTCGGTGGGCTGGCGATGGCATCGCACCAAATCTGGAGATTCTTTGACGTCGTTTCCC
ACGCCGGCAAGCTCTACTGGGTGGACACTGCGACAGGCATCCTCTTCTGCAACCCGTTCGTTGACGAGCTGCACATGGAG
TACGTCCCAATCCCCAGGGTCGACCTCCCGCTAGAACACGACGGAGACTGCCACGGCCGTGGCTACTGCGCCGAGAGAGC
GCTCGCCTCCCGCCACTGCGTGCAGCTGAGCGACGGCAAGTTCAGGTGCGTGGACATGGGCTCTGCAAGCGATGGTGTTA
CTACCAAGGTCCCCATGCACACGCAGATTGATCCAGGGACCAAGGTGTGGACTCTTGAGTACGCCGTGAGCTTCGCCGAC
ATCTGGGCCAGCGAGAGCTACAAGGCGACTGGGATGTCGGAGAAGGCCCCGGTGCTCGCGCTCGTCCACCCCAAGAACCC
CAACATGGTGTACTTCTTCGTAGAAGTCACCAGCCTGCGCACCACCGACTTCTACGGCCTCTATGTGCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25616.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis