Browse Element(s) Details


OsAffx.25619.1.S1_at

Description tigr:9631.m04684
TID=OsAffx.25619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to unconventional myosin heavy chain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4814011/11unconventional myosin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48090Os.2852.1.S1_at10/113+27296422..27300389Vegetatible incompatibility protein HET-E-1, putative, expressed
LOC_Os03g48100Os.52277.1.S1_x_at11/113+27300802..27307338expressed protein
LOC_Os03g48100Os.52277.1.S1_at9/113+27300802..27307338expressed protein
LOC_Os03g48104Os.50749.1.A1_at10/113+27312221..27313439expressed protein
LOC_Os03g48110Os.9082.1.S1_at9/113+27314050..27318264expressed protein
LOC_Os03g48120OsAffx.29738.3.S1_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48120OsAffx.29738.3.S1_x_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48140OsAffx.25619.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48140Os.10915.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48150Os.15951.1.S1_at2/113+27344213..27346915expressed protein
LOC_Os03g48150OsAffx.5018.1.S1_at1/113+27344213..27346915expressed protein
LOC_Os03g48160OsAffx.13401.1.S1_at10/113+27352532..27355617expressed protein
LOC_Os03g48170Os.20457.1.S1_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_x_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_at10/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25619.1.S1_at--1034--6131Chr03:27323597..27323620 (24 bp)
GAGGGATCACAACTCACTAGTGGGA
LOC_Os03g48140
OsAffx.25619.1.S1_at--974--8191Chr03:27323575..27323599 (25 bp)
GGAAGGTAGTTGTTGACTCGCCCAC
LOC_Os03g48140
OsAffx.25619.1.S1_at--1082--9331Chr03:27323558..27323582 (25 bp)
TCGCCCACCAACGATATATGGCAGA
LOC_Os03g48140
OsAffx.25619.1.S1_at--163--7851Chr03:27323527..27323551 (25 bp)
GGTACGAGGTGCACCGGTCACTAGC
LOC_Os03g48140
OsAffx.25619.1.S1_at--241--7831Chr03:27323512..27323536 (25 bp)
GGTCACTAGCGAGCGATGCATCCGA
LOC_Os03g48140
OsAffx.25619.1.S1_at--1047--2251Chr03:27323487..27323511 (25 bp)
AAATCACAGTTTCTCAGTGCAGCAG
LOC_Os03g48140
OsAffx.25619.1.S1_at--750--3391Chr03:27323468..27323492 (25 bp)
CAGCAGACGGCTCCAAAACGGATGG
LOC_Os03g48140
OsAffx.25619.1.S1_at--138--8011Chr03:27323449..27323473 (25 bp)
GGATGGACTGCTTGGATCTGACTCA
LOC_Os03g48140
OsAffx.25619.1.S1_at--890--471Chr03:27323434..27323458 (25 bp)
ATCTGACTCAGTTTCATTACTCCCT
LOC_Os03g48140
OsAffx.25619.1.S1_at--609--3811Chr03:27323407..27323431 (25 bp)
CTCCAGAATTCATCGTGTTCGCATT
LOC_Os03g48140
OsAffx.25619.1.S1_at--1051--3531Chr03:27323397..27323421 (25 bp)
CATCGTGTTCGCATTGAGACCAAAG
LOC_Os03g48140
Target Sequence 
GAGGGATCACAACTCACTAGTGGGAAGGTAGTTGTTGACTCGCCCACCAACGATATATGGCAGATTGGCAGGTACGAGGT
GCACCGGTCACTAGCGAGCGATGCATCCGAAAATCACAGTTTCTCAGTGCAGCAGACGGCTCCAAAACGGATGGACTGCT
TGGATCTGACTCAGTTTCATTACTCCCTCCCTCCAGAATTCATCGTGTTCGCATTGAGACCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis