Browse Element(s) Details


OsAffx.25680.1.S1_at

Description tigr:9631.m05047
TID=OsAffx.25680.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5166010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51640Os.9036.1.S1_at10/113+29507217..29510153expressed protein
LOC_Os03g51650Os.11802.1.S1_at11/113+29511103..29516407expressed protein
LOC_Os03g51660OsAffx.25680.1.S1_at10/113+29533678..29535394hypothetical protein
LOC_Os03g51670Os.54070.1.S1_at11/113+29536489..29541868serine esterase family protein, expressed
LOC_Os03g51680Os.53824.1.S1_x_at11/113+29543527..29546348Ubiquitin ligase protein FANCL, putative, expressed
LOC_Os03g51680Os.53425.1.S1_at10/113+29543527..29546348Ubiquitin ligase protein FANCL, putative, expressed
LOC_Os03g51690Os.151.2.S1_at11/113+29546838..29557422Homeobox protein OSH1, putative, expressed
LOC_Os03g51690Os.151.1.S1_x_at10/113+29546838..29557422Homeobox protein OSH1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25680.1.S1_at--158--3491Chr03:29535317..29535340 (24 bp)
CATGGCCTGCCGTCCACCGAAGGTG
LOC_Os03g51660
OsAffx.25680.1.S1_at--898--8051Chr03:29535175..29535199 (25 bp)
GGAGAGTTGCATCATCACCAGATCA
LOC_Os03g51660
OsAffx.25680.1.S1_at--1066--4671NONE
GCGGTGCAGGAAGCCTTTTGCACAA
NONE
OsAffx.25680.1.S1_at--677--2191Chr03:29533959..29533983 (25 bp)
ACAAATTCAGCTATTGCCTCGGCGC
LOC_Os03g51660
OsAffx.25680.1.S1_at--971--9431Chr03:29533941..29533965 (25 bp)
TCGGCGCCACCACTGAAATTTAGCA
LOC_Os03g51660
OsAffx.25680.1.S1_at--68--2811Chr03:29533821..29533844 (24 bp)
AAGATCAATCTTTGCCTACCTCCAT
LOC_Os03g51660
OsAffx.25680.1.S1_at--1104--671Chr03:29533784..29533808 (25 bp)
ATGACAGTGCTGAATCCCCATTGAA
LOC_Os03g51660
OsAffx.25680.1.S1_at--28--5251Chr03:29533773..29533797 (25 bp)
GAATCCCCATTGAATACTTACCCAT
LOC_Os03g51660
OsAffx.25680.1.S1_at--1159--10451Chr03:29533756..29533780 (25 bp)
TTACCCATGGGAGGGCATCCACGGA
LOC_Os03g51660
OsAffx.25680.1.S1_at--206--6131Chr03:29533722..29533746 (25 bp)
GAGGGCGTTCACAGTGCGACACAAA
LOC_Os03g51660
OsAffx.25680.1.S1_at--1123--7291Chr03:29533709..29533733 (25 bp)
GTGCGACACAAAACATTGCTGATAG
LOC_Os03g51660
Target Sequence 
CATGGCCTGCCGTCCACCGAAGGTGGAGAGTTGCATCATCACCAGATCAAGGAGCCTCCTCCAGAGGTGGAGCAGACGGG
CGGGAAGGGGTGGGCGGCGATGTCGGAGGCGCTGATCGGGTCGCGGCCGCCGCGGTGCGAGGGCAAGTGCGCGCCGTGCG
GGCGGTGCGAGGCGGTGCAGGAAGCCTTTTGCACAAATTCAGCTATTGCCTCGGCGCCACCACTGAAATTTAGCACCAAG
ATCAATCTTTGCCTACCTCCATGGGTGCAAGAAAATGACAGTGCTGAATCCCCATTGAATACTTACCCATGGGAGGGCAT
CCACGGACCACGGTGTGAGGGCGTTCACAGTGCGACACAAAACATTGCTGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis