Browse Element(s) Details


OsAffx.25718.1.S1_at

Description tigr:9631.m05386
TID=OsAffx.25718.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g296762/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29140NANA5+17041144..17045370retrotransposon protein, putative, unclassified
LOC_Os05g29150NANA5+17047369..17048285hypothetical protein
LOC_Os05g29160OsAffx.18924.3.S1_at11/115+17050358..17051401hypothetical protein
LOC_Os05g29160OsAffx.18924.2.S1_x_at4/115+17050358..17051401hypothetical protein
LOC_Os05g29170Os.49558.1.S1_at11/115+17054231..17054770expressed protein
LOC_Os05g29174Os.46012.2.S1_x_at9/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.46012.3.S1_x_at6/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.27088.1.A1_x_at4/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.54691.1.S1_x_at1/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29676OsAffx.25718.1.S1_at2/115+17068353..17071320Zinc finger, C3HC4 type family protein
LOC_Os05g29680OsAffx.14871.1.S1_at11/115+17073457..17073885hypothetical protein
LOC_Os05g29690NANA5+17077033..17081239retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29700OsAffx.11392.2.S1_x_at11/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29700OsAffx.2719.1.S1_at5/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29700OsAffx.11392.1.S1_at1/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29710Os.9300.1.S1_at10/115+17094716..17096099Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25718.1.S1_at--668--1711Chr03:31389980..31390004 (25 bp)
ACCACGCGAAGCTATGTCTGATGTT
NONE
OsAffx.25718.1.S1_at--1134--6271Chr03:31389999..31390023 (25 bp)
GATGTTTTTCGGGAACTCTTGTGAA
NONE
OsAffx.25718.1.S1_at--611--891Chr03:31390066..31390090 (25 bp)
AGGCTCTAGCCTACCCTTCAATTTT
NONE
OsAffx.25718.1.S1_at--352--7951Chr03:31390114..31390138 (25 bp)
GGATATCTTTCATAACTGCTGTTGG
NONE
OsAffx.25718.1.S1_at--251--5872Chr05:17071084..17071108 (25 bp)
GAGCCCCATGGGAGCGATCTGATTG
LOC_Os05g29676
OsAffx.25718.1.S1_at--635--2672Chr05:17071120..17071144 (25 bp)
AAGCGGTATGCATTAAAGGCCCAAT
LOC_Os05g29676
OsAffx.25718.1.S1_at--886--8392Chr03:31390235..31390259 (25 bp)
GGCCCAATTGGCCAATTCTGCATGG
NONE
OsAffx.25718.1.S1_at--184--10612Chr03:31390250..31390274 (25 bp)
TTCTGCATGGCCCATTAGGCACCAA
NONE
OsAffx.25718.1.S1_at--582--4371Chr03:31390271..31390295 (25 bp)
CCAACTCTTTGGGTATTCAGCTTTA
NONE
OsAffx.25718.1.S1_at--149--8931Chr03:31390474..31390498 (25 bp)
TGAGCCGTGACAGGCATAGGCACAC
NONE
OsAffx.25718.1.S1_at--1008--5113Chr05:17071440..17071464 (25 bp)
GCACACGTGACTGAATTGGCAATCC
NONE
Target Sequence 
ACCACGCGAAGCTATGTCTGATGTTTTTCGGGAACTCTTGTGAAGCATCATGGAAGCTGGGGCGGATCCACCAGGTAGGC
TTCATCAGGCTCTAGCCTACCCTTCAATTTTTGCAAAAAAATATCAACTACATAGGATATCTTTCATAACTGCTGTTGGA
GGAAGACGAGAAGAGGTCGGGCGTCAGGAGGAAGATGAACAGGAGCCCCATGGGAGCGATCTGATTGGGGAGAGGGTGAA
GCGGTATGCATTAAAGGCCCAATTGGCCAATTCTGCATGGCCCATTAGGCACCAACTCTTTGGGTATTCAGCTTTAGGGA
TTAGATTGGACACAAGGCGATGGGGATGGCTCATTGCAATTGAGGGCTTGCGGCGGCGACGGCGCCAGTGGGCACGAGGT
GCGGCGAGCGCACGGTGCCACAACGGCAGCCCAAGACCCGAGTGCCCACGGCTACGACGGGCGAAGGGGTGTTGGGCACT
TGGGCGCTTGGCTGTGAGCCGTGACAGGCATAGGCACACGTGACTGAATTGGCAATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis