Browse Element(s) Details


OsAffx.25738.1.S1_at

Description tigr:9631.m05554
TID=OsAffx.25738.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5671011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56682NANA3+32227675..32228405hypothetical protein
LOC_Os03g56690OsAffx.10434.1.S1_at11/113+32230883..32231638hypothetical protein
LOC_Os03g56700OsAffx.25737.1.S1_at11/113+32246007..32247298expressed protein
LOC_Os03g56700OsAffx.25737.1.S1_x_at11/113+32246007..32247298expressed protein
LOC_Os03g56710OsAffx.25738.1.S1_at11/113+32252333..32255041hypothetical protein
LOC_Os03g56710OsAffx.25738.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.1.S1_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56714OsAffx.13510.1.S1_at11/113+32257582..32258325expressed protein
LOC_Os03g56720OsAffx.22657.1.S1_at7/113+32259268..32260244hypothetical protein
LOC_Os03g56724NANA3+32261045..32262136hypothetical protein
LOC_Os03g56730Os.26576.2.S1_x_at11/113+32264338..32265988expressed protein
LOC_Os03g56730Os.26576.1.S1_at10/113+32264338..32265988expressed protein
LOC_Os03g56740OsAffx.13512.1.S1_at11/113+32268118..32274016hypothetical protein
LOC_Os03g56740OsAffx.29281.1.S1_at1/113+32268118..32274016hypothetical protein
LOC_Os03g56750OsAffx.13513.1.S1_at11/113+32275092..32276098hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_x_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56770OsAffx.22658.1.S1_at11/113+32279719..32281995hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25738.1.S1_at--659--7491Chr03:32252891..32252915 (25 bp)
GTGGGTGGAACATGACTACGACATT
LOC_Os03g56710
OsAffx.25738.1.S1_at--374--8171Chr03:32252885..32252909 (25 bp)
GGAACATGACTACGACATTGGCACG
LOC_Os03g56710
OsAffx.25738.1.S1_at--898--5631Chr03:32252872..32252896 (25 bp)
GACATTGGCACGCAGGTCTTGGACC
LOC_Os03g56710
OsAffx.25738.1.S1_at--605--10811Chr03:32252854..32252878 (25 bp)
TTGGACCCTCCCTTGGATGGCAAGG
LOC_Os03g56710
OsAffx.25738.1.S1_at--205--6511Chr03:32252813..32252837 (25 bp)
GATATGCTGGATCGCCGCTTGCCAG
LOC_Os03g56710
OsAffx.25738.1.S1_at--923--8871Chr03:32252676..32252700 (25 bp)
TGATGGGCATGGCAAGCCTGTACAT
LOC_Os03g56710
OsAffx.25738.1.S1_at--613--8231Chr03:32252666..32252690 (25 bp)
GGCAAGCCTGTACATGGTCGAGTCC
LOC_Os03g56710
OsAffx.25738.1.S1_at--497--3871Chr03:32252659..32252683 (25 bp)
CTGTACATGGTCGAGTCCTTGGATG
LOC_Os03g56710
OsAffx.25738.1.S1_at--777--8991Chr03:32252556..32252580 (25 bp)
TGAAGCAACAATGGTGCATAGCCGA
LOC_Os03g56710
OsAffx.25738.1.S1_at--1044--8571Chr03:32252522..32252546 (25 bp)
TGGTCGTGCGTTCTTGGTAGCTTCA
LOC_Os03g56710
OsAffx.25738.1.S1_at--483--4571Chr03:32252428..32252452 (25 bp)
GCGCGCGATAAGTATTTTGAGGTGT
LOC_Os03g56710
Target Sequence 
GTGGGTGGAACATGACTACGACATTGGCACGCAGGTCTTGGACCCTCCCTTGGATGGCAAGGACCACGAGAAGGTGCCGA
TATGCTGGATCGCCGCTTGCCAGGGCAAGTTCTACTTCAATGGCGGCTTCGAAAGCATCGGCGTGCTGGAGTTCTCCCCC
TCGCCAACATTCAGCTCCATCGCAATCATCGACCCCATCATTGGAGGATTAGGGGTGATGGGCATGGCAAGCCTGTACAT
GGTCGAGTCCTTGGATGAACTATACATGGTTTGCCAAATGTATGACTCTGACATGAAGACCATCTACGATGTTACTGTTT
ATAGGATGGATTTCTTGAAGCAACAATGGTGCATAGCCGAGGACATTGGTGGTCGTGCGTTCTTGGTAGCTTCATGCTAT
TTTGGTGCTTCACGTTCAGCTGATGAGTGTGGGCTGGAGAAGGATTGTGTCTACTCTATTTTTGCGCGCGATAAGTATTT
TGAGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis