Browse Element(s) Details


OsAffx.25778.1.S1_at

Description tigr:9638.m01505
TID=OsAffx.25778.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g151101/11hypothetical protein
LOC_Os04g010301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15060NANA5+8530626..8533080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15070NANA5+8540545..8541066hypothetical protein
LOC_Os05g15080OsAffx.26902.1.S1_at11/115+8542996..8543961hypothetical protein
LOC_Os05g15090NANA5+8545153..8549384retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15100OsAffx.31646.2.S1_at11/115+8550052..8551403hypothetical protein
LOC_Os05g15110Os.10731.1.A1_a_at11/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.46610.1.S1_x_at4/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.47999.2.A1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.38764.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.20877.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15120OsAffx.26903.1.S1_at11/115+8559715..8560026expressed protein
LOC_Os05g15130Os.20602.2.S1_x_at11/115+8560824..8563004hAT family dimerisation domain containing protein
LOC_Os05g15140Os.21083.1.S1_at11/115+8563863..8568769expressed protein
LOC_Os05g15150Os.50261.1.S1_at11/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15150Os.50261.1.S2_at10/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15160Os.48609.1.S1_s_at11/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.23696.1.S1_x_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.988.1.S1_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25778.1.S1_at--519--9411Chr10:8868974..8868998 (25 bp)
TCGTCGCCTTCGTTGACCAGAACCT
NONE
OsAffx.25778.1.S1_at--379--9291Chr10:8868908..8868932 (25 bp)
TCCGTCGTCGCATAAGTGTTGGTAA
NONE
OsAffx.25778.1.S1_at--645--4012Chr10:8868906..8868930 (25 bp)
CGTCGTCGCATAAGTGTTGGTAAGA
NONE
OsAffx.25778.1.S1_at--501--3993Chr02:13813756..13814105 (25 bp)
CGTCGCATAAGTGTTGGTAAGAATC
NONE
OsAffx.25778.1.S1_at--1048--97524Chr12:14193602..14193625 (24 bp)
TAAGTGTTGGTAAGAATCGCCGTCA
NONE
OsAffx.25778.1.S1_at--387--7791Chr10:8868856..8868880 (25 bp)
GGTGCCCTCCATTTGCGTTATTGTG
NONE
OsAffx.25778.1.S1_at--464--7511Chr10:8868829..8868853 (25 bp)
GTGGTTCGCCGGTAACCGCTCCCAT
NONE
OsAffx.25778.1.S1_at--399--4031Chr10:8868367..8868826 (25 bp)
CGTTCACCGCCGTGTGACGCTTAAA
NONE
OsAffx.25778.1.S1_at--1026--6731Chr10:8868366..8868825 (25 bp)
GTTCACCGCCGTGTGACGCTTAAAC
NONE
OsAffx.25778.1.S1_at--785--1791Chr10:8868362..8868383 (22 bp)
ACCGCCGTGTGACGCTTAAACCTAG
NONE
OsAffx.25778.1.S1_at--920--4111Chr10:8868360..8868383 (24 bp)
CGCCGTGTGACGCTTAAACCTAGCC
NONE
Target Sequence 
TCGTCGCCTTCGTTGACCAGAACCTCGCCGCCCTTCGGAGCTCATCGCCGGTCATCTCCTTCGCTGTCCGTCGTCGCATA
AGTGTTGGTAAGAATCGCCGTCACCTTCTCTACCTCCCGGTGCCCTCCATTTGCGTTATTGTGCCGTGGTTCGCCGGTAA
CCGCTCCCATGCCGTTCACCGCCGTGTGACGCTTAAACCTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis