Browse Element(s) Details


OsAffx.25796.1.S1_at

Description tigr:9631.m06163
TID=OsAffx.25796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6240010/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62350Os.35344.18.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350Os.35344.3.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350OsAffx.22940.5.S1_x_at3/113+35265693..35267285hypothetical protein
LOC_Os03g62360NANA3+35268944..35269576hypothetical protein
LOC_Os03g62370Os.49694.1.S1_at11/113+35271028..35273340WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g62379OsAffx.25795.1.S1_at10/113+35274340..35276037Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g62388OsAffx.3674.1.S1_at11/113+35276862..35279517hypothetical protein
LOC_Os03g62400OsAffx.25796.1.S1_at10/113+35284103..35287960pentatricopeptide, putative
LOC_Os03g62410Os.52881.1.S1_at11/113+35289129..35293830Phospholipase D gamma 3, putative, expressed
LOC_Os03g62420OsAffx.13583.1.S1_at11/113+35295028..35297793expressed protein
LOC_Os03g62430Os.49388.1.S1_at9/113+35299723..35304099Calcium binding EGF domain containing protein, expressed
LOC_Os03g62440NANA3+35304728..35305240hypothetical protein
LOC_Os03g62450Os.10827.1.S1_x_at10/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62450Os.46055.2.S1_x_at6/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.7.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.1.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.2.S1_x_at4/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.5.S1_x_at1/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25796.1.S1_at--615--7411Chr03:35285474..35285498 (25 bp)
GTGTTGGCAAGATAGCTGACGCTGA
LOC_Os03g62400
OsAffx.25796.1.S1_at--554--8931Chr03:35285419..35285443 (25 bp)
TGACCCGATACTTTGGCATGCACTA
LOC_Os03g62400
OsAffx.25796.1.S1_at--127--1971Chr03:35285338..35285362 (25 bp)
ACTGATGGAACTTGAGCCGTTTTCT
LOC_Os03g62400
OsAffx.25796.1.S1_at--272--5871Chr03:35285325..35285349 (25 bp)
GAGCCGTTTTCTGCTAGTTCATATG
LOC_Os03g62400
OsAffx.25796.1.S1_at--483--1531Chr03:35285209..35285233 (25 bp)
AGCTGGAATTAGTTGGACCGACTTT
LOC_Os03g62400
OsAffx.25796.1.S1_at--2--8031Chr03:35285184..35285208 (25 bp)
GGAGGATCCATTCATAATTTCATTG
LOC_Os03g62400
OsAffx.25796.1.S1_at--238--8051Chr03:35285157..35285181 (25 bp)
GGAGATAACTCCTGTTCACATAACA
LOC_Os03g62400
OsAffx.25796.1.S1_at--503--2231Chr03:35285133..35285157 (25 bp)
ACAATTCACACAACCTTGGAGGAGT
LOC_Os03g62400
OsAffx.25796.1.S1_at--161--31Chr03:35284999..35285023 (25 bp)
ATTGGCAGTGGCTTTTGGGTTGACA
LOC_Os03g62400
OsAffx.25796.1.S1_at--836--8631Chr03:35284984..35285008 (25 bp)
TGGGTTGACAACTTTGCCATCTGTT
LOC_Os03g62400
OsAffx.25796.1.S1_at--328--4331NONE
CCATCTGTTGCTCCTGGAAGATTAA
NONE
Target Sequence 
GTGTTGGCAAGATAGCTGACGCTGAAGATTTCATAATGAGTTCTGGATCAGAAAATGACCCGATACTTTGGCATGCACTA
TTGCGTGCTTGCAGAGTCCATGGGGACAAAGAAAGATGTACAAAAATTGGAGAGAAACTGATGGAACTTGAGCCGTTTTC
TGCTAGTTCATATGTCATGTTGTATAACTTATACATGGATGCTGGAAAAATCTCATTGGCTATGAGGACGAGAGGCCTAA
TGAGAGAGCGAGGCATCAGTAACGAAGCTGGAATTAGTTGGACCGACTTTGGAGGATCCATTCATAATTTCATTGATGGA
GATAACTCCTGTTCACATAACACAATTCACACAACCTTGGAGGAGTTGTTGGTCAGGGTGAAACAGAAGACTGAGCATGG
TGGAACAAACATTTGGGAGTTAGAATTCCAAAGCAGAAAGCTTAGTGAGAGCTCAATCAGCAGACATGGTGAATTATTGG
CAGTGGCTTTTGGGTTGACAACTTTGCCATCTGTTGCTCCTGGAAGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis