Browse Element(s) Details


OsAffx.25819.2.S1_at

Description tigr:9633.m03830
TID=OsAffx.25819.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4094011/11hypothetical protein
LOC_Os09g011305/11hypothetical protein
LOC_Os11g230602/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40900Os.26497.1.S1_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.4583.1.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.4.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.5.S1_x_at11/115+23907303..23911230expressed protein
LOC_Os05g40910Os.51274.1.S1_at9/115+23912941..23914408expressed protein
LOC_Os05g40920Os.56288.1.S1_at11/115+23917060..23919400expressed protein
LOC_Os05g40930NANA5+23923527..23924994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g40940OsAffx.25819.2.S1_at11/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.3.S1_at3/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.13875.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40950Os.56225.1.S1_at11/115+23930253..23931294expressed protein
LOC_Os05g40960OsAffx.27267.1.S1_at11/115+23932212..23934242myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g40970NANA5+23936885..23938426expressed protein
LOC_Os05g40980Os.24217.1.A1_s_at11/115+23940462..23942904Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40990Os.6676.1.S1_at11/115+23944568..23947596oxidoreductase, FAD-binding family protein, expressed
LOC_Os05g41000Os.17783.1.S1_at11/115+23950403..23955844Endonuclease/Exonuclease/phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25819.2.S1_at--243--5672Chr09:134213..134392 (25 bp)
GACATGAGCAGCCTTTTGTCTTCAT
LOC_Os09g01130
OsAffx.25819.2.S1_at--73--4453Chr04:62965..63280 (25 bp)
GCCTTTTGTCTTCATCAAATCCCAA
NONE
OsAffx.25819.2.S1_at--816--6252Chr04:63085..63106 (22 bp)
GATGGGCCAAATCCTCATGATAATG
NONE
OsAffx.25819.2.S1_at--976--391Chr05:23925505..23925529 (25 bp)
ATCAGTGAGCCTAGTCAAGAACCAG
LOC_Os05g40940
OsAffx.25819.2.S1_at--770--8771Chr05:23925446..23925470 (25 bp)
TGAGTTAAATACTGCCCCAATCTGG
LOC_Os05g40940
OsAffx.25819.2.S1_at--927--8994Chr04:63378..63402 (25 bp)
TGAAGACCCTTACTCATGCTCTGCT
NONE
OsAffx.25819.2.S1_at--758--4793Chr04:63400..63424 (25 bp)
GCTCCCAATATTACTGCATCAACTT
NONE
OsAffx.25819.2.S1_at--52--2534Chr11:12784402..12784426 (25 bp)
AACTTCTGCATCTCCTCATGAATTT
LOC_Os11g23060
OsAffx.25819.2.S1_at--48--9634Chr11:12784417..12784441 (25 bp)
TCATGAATTTTCACACTTCGCACCT
LOC_Os11g23060
OsAffx.25819.2.S1_at--277--2191Chr05:23925260..23925284 (25 bp)
ACACTTCGCACCTGCATCATTGTTT
LOC_Os05g40940
OsAffx.25819.2.S1_at--1014--9051Chr05:23925248..23925272 (25 bp)
TGCATCATTGTTTACTAATCCCGCA
LOC_Os05g40940
Target Sequence 
GACATGAGCAGCCTTTTGTCTTCATCAAATCCCAAATATGGTAGTGATGACGATGATGATGATGATGATGATGATGGTAT
AGAAGGACATATCTCACCAGTACGTGAAGGTGAACCAGATGGGCCAAATCCTCATGATAATGGTGAGGGAGTTTTACAAT
GTTTACCACCATCACCACCACCGTTGTATCCTATTCATTCTGATGATGAAGCAGAAGAAATGCATTCAGCTATGGATATC
AGTGAGCCTAGTCAAGAACCAGAAATACTAAGGCCAAATCGGGTGTTTCATATCAATGAGTTAAATACTGCCCCAATCTG
GACTGAATCTCCAGAGGAAGAGGAAGATCCGGAAGAACGAGAGCTTGAGACACAAGAACATCTTTCTATACATACTAATG
ATCAAGAAAATAATGAAGACCCTTACTCATGCTCTGCTCCCAATATTACTGCATCAACTTCTGCATCTCCTCATGAATTT
TCACACTTCGCACCTGCATCATTGTTTACTAATCCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25819.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis