Browse Element(s) Details


Os.6676.1.S1_at

Description gb:AK071883.1
DB_XREF= gi:32981906
TID=Os.6676.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046O12, full insert sequence.
FL= gb:AK105459.1 gb:AK073699.1 gb:AK071883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4099011/11oxidoreductase, FAD-binding family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40930NANA5+23923527..23924994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g40940OsAffx.25819.2.S1_at11/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.3.S1_at3/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.13875.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40950Os.56225.1.S1_at11/115+23930253..23931294expressed protein
LOC_Os05g40960OsAffx.27267.1.S1_at11/115+23932212..23934242myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g40970NANA5+23936885..23938426expressed protein
LOC_Os05g40980Os.24217.1.A1_s_at11/115+23940462..23942904Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40990Os.6676.1.S1_at11/115+23944568..23947596oxidoreductase, FAD-binding family protein, expressed
LOC_Os05g41000Os.17783.1.S1_at11/115+23950403..23955844Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g41010Os.25020.1.S1_at11/115+23957763..23960697oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g41030Os.8994.1.S1_at11/115+23962324..23964637Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g41040NANA5+23967746..23971172transposon protein, putative, Mutator sub-class
LOC_Os05g41050OsAffx.27271.1.S1_at11/115+23971575..23972158hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0042128biological_processnitrate assimilation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004128molecular_functioncytochrome-b5 reductase activity
GO:0008134molecular_functiontranscription factor binding
GO:0008940molecular_functionnitrate reductase activity
GO:0009703molecular_functionnitrate reductase (NADH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6676.1.S1_at--84--5591Chr05:23946927..23946951 (25 bp)
GAAATGATCCAAACCCATTGCCCGG
LOC_Os05g40990
Os.6676.1.S1_at--224--2371Chr05:23947141..23947165 (25 bp)
AAAGCCATGGCTGAACACCTGGAGA
LOC_Os05g40990
Os.6676.1.S1_at--859--7971Chr05:23947161..23947185 (25 bp)
GGAGAATCTTGGCTACACGAAGGAA
LOC_Os05g40990
Os.6676.1.S1_at--397--2291Chr05:23947184..23947208 (25 bp)
AAATGCAGTTCCAATTCTAAGCCTC
LOC_Os05g40990
Os.6676.1.S1_at--1074--2491Chr05:23947244..23947268 (25 bp)
AACATTTTCGTTCACCTTCAGTAGA
LOC_Os05g40990
Os.6676.1.S1_at--206--31Chr05:23947270..23947294 (25 bp)
ATTGTCTGACCCTAGTGCCATTTAA
LOC_Os05g40990
Os.6676.1.S1_at--1095--1451Chr05:23947392..23947416 (25 bp)
AGAAGTTCCTGTAGCCCATCATTTT
LOC_Os05g40990
Os.6676.1.S1_at--477--9211Chr05:23947419..23947443 (25 bp)
TGCCAATGCTGTTCAATTCCAGACA
LOC_Os05g40990
Os.6676.1.S1_at--529--6611Chr05:23947494..23947518 (25 bp)
GTTGGAACGTTCATTGCTCCAGCTA
LOC_Os05g40990
Os.6676.1.S1_at--103--9111Chr05:23947508..23947532 (25 bp)
TGCTCCAGCTAACTCGTTGCTCAGG
LOC_Os05g40990
Os.6676.1.S1_at--868--5851Chr05:23947545..23947569 (25 bp)
GACCAACTTGTACCATTTGATTATG
LOC_Os05g40990
Target Sequence 
GAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAGATATTGAGATGCGGACCTCCTCCCATGAACAAAGC
CATGGCTGAACACCTGGAGAATCTTGGCTACACGAAGGAAATGCAGTTCCAATTCTAAGCCTCCACAGTGGAACAATACC
GAAATAACAGCGATGGACAACATTTTCGTTCACCTTCAGTAGAAATTGTCTGACCCTAGTGCCATTTAATCAAGATATAG
GCGAACTTTAAACCCGATAAAAGTAGAATGTCAGGTCAGCATATTTTGAGTGAAAGCAAAAAACAACACCTACTTGAGTT
GGGGTCAGAAGTTCCTGTAGCCCATCATTTTTGTGCCAATGCTGTTCAATTCCAGACAGACAGAATGAAACTAATTATTT
TTTTTTCAATCAGAATTTTGGACACAAGGTTGGAACGTTCATTGCTCCAGCTAACTCGTTGCTCAGGTGATTAAAGAATG
ACCAACTTGTACCATTTGATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis