Browse Element(s) Details


Os.8994.1.S1_at

Description gb:AK069135.1
DB_XREF= gi:32979159
TID=Os.8994.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007E22, full insert sequence.
FL= gb:AK069135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4103011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40970NANA5+23936885..23938426expressed protein
LOC_Os05g40980Os.24217.1.A1_s_at11/115+23940462..23942904Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40990Os.6676.1.S1_at11/115+23944568..23947596oxidoreductase, FAD-binding family protein, expressed
LOC_Os05g41000Os.17783.1.S1_at11/115+23950403..23955844Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g41010Os.25020.1.S1_at11/115+23957763..23960697oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g41030Os.8994.1.S1_at11/115+23962324..23964637Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g41040NANA5+23967746..23971172transposon protein, putative, Mutator sub-class
LOC_Os05g41050OsAffx.27271.1.S1_at11/115+23971575..23972158hypothetical protein
LOC_Os05g41060Os.10931.1.S1_at9/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41060Os.4733.1.S1_at1/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41070Os.51688.1.S1_s_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41070Os.51688.1.S1_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41080Os.18405.1.S1_at10/115+23984503..23986986Histone H3, putative, expressed
LOC_Os05g41090Os.53033.1.S1_at11/115+23987984..23991882Calcium and calcium/calmodulin-dependent serine/threonine-proteinkinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8994.1.S1_at--1114--1751Chr05:23963666..23964148 (25 bp)
ACCTGCGCAGCCTTTGGATTCAATG
LOC_Os05g41030
Os.8994.1.S1_at--674--7931Chr05:23963651..23963675 (25 bp)
GGATTCAATGTTCCAATGGGCCCAA
LOC_Os05g41030
Os.8994.1.S1_at--103--6171Chr05:23963593..23963614 (22 bp)
GTGAGGGCCCACAGTTCCCTGGGAC
LOC_Os05g41030
Os.8994.1.S1_at--118--7231Chr05:23962630..23962654 (25 bp)
GTCGCCGGGATGTTTAGAATCGTTT
LOC_Os05g41030
Os.8994.1.S1_at--557--9391Chr05:23962611..23962635 (25 bp)
TCGTTTGATTGATCCGCTCAACTAG
LOC_Os05g41030
Os.8994.1.S1_at--878--4831Chr05:23962596..23962620 (25 bp)
GCTCAACTAGCTATCATTTTCTGGG
LOC_Os05g41030
Os.8994.1.S1_at--89--6271Chr05:23962568..23962592 (25 bp)
GATGTGGCTGTTTGTTTGTATGGTC
LOC_Os05g41030
Os.8994.1.S1_at--73--6871Chr05:23962555..23962579 (25 bp)
GTTTGTATGGTCCTTGCTGATCATA
LOC_Os05g41030
Os.8994.1.S1_at--804--8111Chr05:23962437..23962461 (25 bp)
GGACGTATATACTTATCTTGTTCAT
LOC_Os05g41030
Os.8994.1.S1_at--1094--6251Chr05:23962406..23962430 (25 bp)
GATGTGATGACTCACAAGTCGTCAT
LOC_Os05g41030
Os.8994.1.S1_at--432--1151Chr05:23962390..23962414 (25 bp)
AGTCGTCATGTAACCACCTAGTGTG
LOC_Os05g41030
Target Sequence 
ACCTGCGCAGCCTTTGGATTCAATGTTCCAATGGGCCCAACGCCGTCGCCTTCGCCGGCAGCCGTCTCGCCCTCCGGTGA
GGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGCGACGCCGTCCACCAACGCCGCCGCCGCCG
GCCGCTCCGGCGACCACCTNNGTCGCCGTCGGCGTCGCCATTGCCNGCCGCCNCCGTCGTNGTCGCCGGGATGTTTAGAA
TCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCAT
AATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGNCTGGATNTCCANG
ACANTNTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACC
ACCTAGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis