Browse Element(s) Details


Os.53033.1.S1_at

Description gb:AK070533.1
DB_XREF= gi:32980557
TID=Os.53033.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023060B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060B22, full insert sequence.
FL= gb:AK070533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4109011/11Calcium and calcium/calmodulin-dependent serine/threonine-proteinkinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41030Os.8994.1.S1_at11/115+23962324..23964637Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g41040NANA5+23967746..23971172transposon protein, putative, Mutator sub-class
LOC_Os05g41050OsAffx.27271.1.S1_at11/115+23971575..23972158hypothetical protein
LOC_Os05g41060Os.10931.1.S1_at9/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41060Os.4733.1.S1_at1/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41070Os.51688.1.S1_s_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41070Os.51688.1.S1_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41080Os.18405.1.S1_at10/115+23984503..23986986Histone H3, putative, expressed
LOC_Os05g41090Os.53033.1.S1_at11/115+23987984..23991882Calcium and calcium/calmodulin-dependent serine/threonine-proteinkinase, putative, expressed
LOC_Os05g41100Os.51939.1.S1_at11/115+23992386..23994674Krr1 family protein, expressed
LOC_Os05g41110Os.22564.1.S1_at11/115+23994851..2399676660S ribosomal protein L30, putative, expressed
LOC_Os05g41120Os.38127.1.S1_s_at11/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41120Os.38127.1.S1_at7/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41130Os.27954.1.A1_at11/115+24006538..24008510F-box family protein, putative, expressed
LOC_Os05g41140OsAffx.4584.1.S1_at10/115+24010549..24012301hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53033.1.S1_at--518--2211Chr05:23988879..23988903 (25 bp)
ACAACCGTGATGGAACCGTCGACAT
LOC_Os05g41090
Os.53033.1.S1_at--643--1351Chr05:23988851..23988875 (25 bp)
AGAGATCCTGTGTGGGTTCTCCAGC
LOC_Os05g41090
Os.53033.1.S1_at--1033--891Chr05:23988812..23988836 (25 bp)
AGGCGATGATGCTCTTCGCTTGTGC
LOC_Os05g41090
Os.53033.1.S1_at--250--4931Chr05:23988606..23988819 (25 bp)
GCTTGTGCTTCCAGATGTACGACGC
LOC_Os05g41090
Os.53033.1.S1_at--716--751Chr05:23988592..23988616 (25 bp)
ATGTACGACGCTGATCGGTCAGGCT
LOC_Os05g41090
Os.53033.1.S1_at--715--9171Chr05:23988387..23988411 (25 bp)
TGCCTGCCAGGCGACATAACGGAGC
LOC_Os05g41090
Os.53033.1.S1_at--890--5391Chr05:23988208..23988232 (25 bp)
GAAGCTTCTCAGATTGATCGATTTC
LOC_Os05g41090
Os.53033.1.S1_at--1001--5591Chr05:23988118..23988142 (25 bp)
GAAATTTTCATCTGTGTCGGCTGCT
LOC_Os05g41090
Os.53033.1.S1_at--149--2571Chr05:23988080..23988104 (25 bp)
AACTGTAGCTGTTCTGTTGTCACCT
LOC_Os05g41090
Os.53033.1.S1_at--209--9471Chr05:23988068..23988092 (25 bp)
TCTGTTGTCACCTCGTCCGAAAAAA
LOC_Os05g41090
Os.53033.1.S1_at--555--5891Chr05:23988039..23988063 (25 bp)
GAGCGGTGCGGATTTCACATTTTCA
LOC_Os05g41090
Target Sequence 
ACAACCGTGATGGAACCGTCGACATGAGAGAGATCCTGTGTGGGTTCTCCAGCCTCAGGAACTCACGAGGCGATGATGCT
CTTCGCTTGTGCTTCCAGATGTACGACGCTGATCGGTCAGGCTGCATCAGCAAGGAAGAGCTGGCATCAATGCTCCGAGC
GTTGCCGGAGGAGTGCCTGCCAGGCGACATAACGGAGCCGGGGAAGCTGGACGAGGTGTTCGACCAGATGGACGCCGACA
GCGACGGCAAGGTCACCTTCGACGAGTTCAAGGCCGCCATGAACAAGGACAGCGCCCTCCAGGACGTCCTCCTCTCCTCC
CTCCGCCCACAGTAGCAGCAGCAGCAGCAGCAGAAGCTTCTCAGATTGATCGATTTCTTCAGGAAAAATACTAGTATCTG
TACTGCTAATACTTCTGCAGCGAATGGCTGGCTGCCTTATCTGAAATTTTCATCTGTGTCGGCTGCTGAAATGGTAGCAA
AACTGTAGCTGTTCTGTTGTCACCTCGTCCGAAAAAATTATGAGCGGTGCGGATTTCACATTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis