Browse Element(s) Details


OsAffx.4584.1.S1_at

Description tigr:9633.m03851
TID=OsAffx.4584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4114010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41080Os.18405.1.S1_at10/115+23984503..23986986Histone H3, putative, expressed
LOC_Os05g41090Os.53033.1.S1_at11/115+23987984..23991882Calcium and calcium/calmodulin-dependent serine/threonine-proteinkinase, putative, expressed
LOC_Os05g41100Os.51939.1.S1_at11/115+23992386..23994674Krr1 family protein, expressed
LOC_Os05g41110Os.22564.1.S1_at11/115+23994851..2399676660S ribosomal protein L30, putative, expressed
LOC_Os05g41120Os.38127.1.S1_s_at11/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41120Os.38127.1.S1_at7/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41130Os.27954.1.A1_at11/115+24006538..24008510F-box family protein, putative, expressed
LOC_Os05g41140OsAffx.4584.1.S1_at10/115+24010549..24012301hypothetical protein
LOC_Os05g41150Os.52892.1.S1_at11/115+24020523..24023345expressed protein
LOC_Os05g41160Os.52406.1.S1_at10/115+24024185..24026939expressed protein
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41172Os.53510.1.S1_at11/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.11922.1.S1_at6/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.52782.1.S1_at1/115+24032417..24038459YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4584.1.S1_at--438--7571Chr05:24010589..24010613 (25 bp)
GGGCTGGGTTTTCACTGGCCATCCA
LOC_Os05g41140
OsAffx.4584.1.S1_at--1008--3872Chr05:24010592..24010616 (25 bp)
CTGGGTTTTCACTGGCCATCCACCA
LOC_Os05g41140
OsAffx.4584.1.S1_at--1085--1691Chr05:24010613..24010637 (25 bp)
ACCACCTACCAATATACCACAGATG
LOC_Os05g41140
OsAffx.4584.1.S1_at--1082--1691Chr05:24010620..24010644 (25 bp)
ACCAATATACCACAGATGCACCATT
LOC_Os05g41140
OsAffx.4584.1.S1_at--918--3411Chr05:24010641..24010665 (25 bp)
CATTGCTCCACTGCCAACTAAACCT
LOC_Os05g41140
OsAffx.4584.1.S1_at--743--9211Chr05:24010713..24010737 (25 bp)
TCCACATGCAGCTACCTCACTGGGC
LOC_Os05g41140
OsAffx.4584.1.S1_at--7--2171Chr05:24010807..24010831 (25 bp)
ACACTGCAAGGCTACCGGCCGCAAC
LOC_Os05g41140
OsAffx.4584.1.S1_at--634--8411Chr05:24010823..24010847 (25 bp)
GGCCGCAACACTCTACCGGCATTGG
LOC_Os05g41140
OsAffx.4584.1.S1_at--470--9531Chr05:24010834..24010858 (25 bp)
TCTACCGGCATTGGCCAGCCACAGC
LOC_Os05g41140
OsAffx.4584.1.S1_at--32--3311Chr05:24010989..24011013 (25 bp)
CACCGACGCCCTGTTAACAGTGAAA
LOC_Os05g41140
OsAffx.4584.1.S1_at--59--1131Chr03:15799209..15799592 (25 bp)
AGTGAAATTTGCCTGCTTCTTGATT
NONE
Target Sequence 
GGGCTGGGTTTTCACTGGCCATCCACCACCTACCAATATACCACAGATGCACCATTGCTCCACTGCCAACTAAACCTCCG
CCGCCGCGTGGGCACACCGCACCAGTGCCCCCCGCCGGCCAGTCTCCACATGCAGCTACCTCACTGGGCTCCACCTCCAT
TGGCTTCGCCTCCCGTTGCGCATCCATCGTGCGCCAGCCGTCCTTGACGCCGCCGGCCACACTGCAAGGCTACCGGCCGC
AACACTCTACCGGCATTGGCCAGCCACAGCCCCCGGCCCTCGTCGTTGCCCTCTGCCGCAGGCGCGGCCTCCTGCCCCTC
CACCGCCGTCACGGCCTCCGCACCTCCATCTCCAGCACCTCCGCGCTGTCGCGCCCGCCGCTGCTAGCCGCACCCTCCGT
CACCGACGCCCTGTTAACAGTGAAATTTGCCTGCTTCTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis