Browse Element(s) Details


Os.57561.1.S1_at

Description gb:D88621.1
DB_XREF= gi:2605624
GEN=Osmyb5
TID=Os.57561.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57561 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OSMYB5, complete cds.
PROD=OSMYB5
FL= gb:D88621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4116611/11Transcription factor GAMYB, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41120Os.38127.1.S1_s_at11/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41120Os.38127.1.S1_at7/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41130Os.27954.1.A1_at11/115+24006538..24008510F-box family protein, putative, expressed
LOC_Os05g41140OsAffx.4584.1.S1_at10/115+24010549..24012301hypothetical protein
LOC_Os05g41150Os.52892.1.S1_at11/115+24020523..24023345expressed protein
LOC_Os05g41160Os.52406.1.S1_at10/115+24024185..24026939expressed protein
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41172Os.53510.1.S1_at11/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.11922.1.S1_at6/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.52782.1.S1_at1/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41180Os.7817.1.A1_s_at10/115+24039254..24043454Proteasome subunit alpha type 3, putative, expressed
LOC_Os05g41190Os.27687.1.S1_at11/115+24043901..24045244expressed protein
LOC_Os05g41200Os.54462.1.S1_at11/115+24047031..24047769EF hand family protein, expressed
LOC_Os05g41210Os.10290.1.S1_at8/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41210Os.57504.1.S1_x_at1/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41220Os.15191.1.S1_s_at11/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41220Os.27951.1.S1_at1/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009740biological_processgibberellic acid mediated signaling
GO:0045449biological_processregulation of transcription
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57561.1.S1_at--944--7831Chr05:24027810..24027834 (25 bp)
GGTAACTGACGCCAGATTGTCATGA
LOC_Os05g41166
Os.57561.1.S1_at--1142--6591Chr05:24027796..24027820 (25 bp)
GATTGTCATGAGTTGCTGCTCTCTT
LOC_Os05g41166
Os.57561.1.S1_at--990--9091Chr05:24027783..24027807 (25 bp)
TGCTGCTCTCTTGGATAAACTCATC
LOC_Os05g41166
Os.57561.1.S1_at--380--10371Chr05:24027745..24027769 (25 bp)
TTTTATTCCATGAAGCTCGTGAACG
LOC_Os05g41166
Os.57561.1.S1_at--104--9431Chr05:24027729..24027753 (25 bp)
TCGTGAACGAGCCAGTCGTTGCTAT
LOC_Os05g41166
Os.57561.1.S1_at--599--7211Chr05:24027715..24027739 (25 bp)
GTCGTTGCTATCTCTCTTATTAGGA
LOC_Os05g41166
Os.57561.1.S1_at--833--10292Chr01:7015684..7015708 (25 bp)
TTTCCAGTTTGGATATTGCCGTACT
NONE
Os.57561.1.S1_at--1093--6511Chr05:24027679..24027703 (25 bp)
GATATTGCCGTACTCCTTTACTTTT
LOC_Os05g41166
Os.57561.1.S1_at--645--1991Chr05:24027668..24027692 (25 bp)
ACTCCTTTACTTTTCTTCATGTCGA
LOC_Os05g41166
Os.57561.1.S1_at--402--771Chr05:24027650..24027674 (25 bp)
ATGTCGAAATTACCATGCGTGCTAT
LOC_Os05g41166
Os.57561.1.S1_at--519--611Chr05:24027636..24027660 (25 bp)
ATGCGTGCTATGTTGAATTTCATCT
LOC_Os05g41166
Target Sequence 
GGTAACTGACGCCAGATTGTCATGAGTTGCTGCTCTCTTGGATAAACTCATCATGAAACCAAGAATTTTATTCCATGAAG
CTCGTGAACGAGCCAGTCGTTGCTATCTCTCTTATTAGGATTTCCAGTTTGGATATTGCCGTACTCCTTTACTTTTCTTC
ATGTCGAAATTACCATGCGTGCTATGTTGAATTTCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis