Browse Element(s) Details


Os.15191.1.S1_s_at

Description gb:AK068637.1
DB_XREF= gi:32978654
TID=Os.15191.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.15191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086K16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157L19, full insert sequence.
FL= gb:AK068637.1 gb:AK071229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4122011/11SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41172Os.53510.1.S1_at11/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.11922.1.S1_at6/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.52782.1.S1_at1/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41180Os.7817.1.A1_s_at10/115+24039254..24043454Proteasome subunit alpha type 3, putative, expressed
LOC_Os05g41190Os.27687.1.S1_at11/115+24043901..24045244expressed protein
LOC_Os05g41200Os.54462.1.S1_at11/115+24047031..24047769EF hand family protein, expressed
LOC_Os05g41210Os.10290.1.S1_at8/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41210Os.57504.1.S1_x_at1/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41220Os.15191.1.S1_s_at11/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41220Os.27951.1.S1_at1/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41230Os.47896.1.A1_at11/115+24066128..24068334BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os05g41240Os.13978.1.S1_a_at11/115+24070525..24074848MYB transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0004679molecular_functionAMP-activated protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15191.1.S1_s_at--1092--4371Chr05:24055203..24055223 (21 bp)
CCAACCTCCTCGATGTCCATGATTA
LOC_Os05g41220
Os.15191.1.S1_s_at--550--6271Chr05:24055063..24055212 (25 bp)
GATGTCCATGATTATATCCCAGAAA
LOC_Os05g41220
Os.15191.1.S1_s_at--957--8251Chr05:24055033..24055057 (25 bp)
GGCAGCGTGGCAGGATTCGACTCTC
LOC_Os05g41220
Os.15191.1.S1_s_at--673--7231Chr05:24055004..24055028 (25 bp)
GTCGCCTGAACACAGCTATGATCTC
LOC_Os05g41220
Os.15191.1.S1_s_at--919--9311Chr05:24054975..24054999 (25 bp)
TCCCAGGTGATGAGGAGTTTGCCAA
LOC_Os05g41220
Os.15191.1.S1_s_at--250--10191Chr05:24054941..24054965 (25 bp)
TATACTGCCACCTCAGCTTGTAATG
LOC_Os05g41220
Os.15191.1.S1_s_at--657--9771Chr05:24054921..24054945 (25 bp)
TAATGTCTGTTCTTGGTGATACTGA
LOC_Os05g41220
Os.15191.1.S1_s_at--661--2651Chr05:24054874..24054898 (25 bp)
AAGCCAAAGCATGTTGTCCTCAACC
LOC_Os05g41220
Os.15191.1.S1_s_at--499--7251Chr05:24054859..24054883 (25 bp)
GTCCTCAACCACCTGTATATCGAGA
LOC_Os05g41220
Os.15191.1.S1_s_at--420--4771Chr05:24054815..24054839 (25 bp)
GCTGCTTGCTCTTGGAGTCACTCAC
LOC_Os05g41220
Os.15191.1.S1_s_at--502--3331Chr05:24054797..24054821 (25 bp)
CACTCACCGGTTTCAATCCAAGTAT
LOC_Os05g41220
Target Sequence 
CCAACCTCCTCGATGTCCATGATTATATCCCAGAAAGCCTGGGCAGCGTGGCAGGATTCGACTCTCCTCCGTCGCCTGAA
CACAGCTATGATCTCCAGCTCCCAGGTGATGAGGAGTTTGCCAAGGAGCCACCTATACTGCCACCTCAGCTTGTAATGTC
TGTTCTTGGTGATACTGATAACTCTGAAGAACAAACTCTGAAGCCAAAGCATGTTGTCCTCAACCACCTGTATATCGAGA
AAGGATGGGGATCGCAGTCGCTGCTTGCTCTTGGAGTCACTCACCGGTTTCAATCCAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15191.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis