Browse Element(s) Details


Os.7817.1.A1_s_at

Description gb:CA763740
DB_XREF= gi:25807779
DB_XREF=BR060014B10H09.ab1
CLONE=BR060014B10H09.ab1
TID=Os.7817.1
CNT=46
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7817 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein sp:O23715 (A.thaliana) PSA3_ARATH Proteasome subunit alpha type 3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4118010/11Proteasome subunit alpha type 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41150Os.52892.1.S1_at11/115+24020523..24023345expressed protein
LOC_Os05g41160Os.52406.1.S1_at10/115+24024185..24026939expressed protein
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41172Os.53510.1.S1_at11/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.11922.1.S1_at6/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.52782.1.S1_at1/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41180Os.7817.1.A1_s_at10/115+24039254..24043454Proteasome subunit alpha type 3, putative, expressed
LOC_Os05g41190Os.27687.1.S1_at11/115+24043901..24045244expressed protein
LOC_Os05g41200Os.54462.1.S1_at11/115+24047031..24047769EF hand family protein, expressed
LOC_Os05g41210Os.10290.1.S1_at8/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41210Os.57504.1.S1_x_at1/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41220Os.15191.1.S1_s_at11/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41220Os.27951.1.S1_at1/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41230Os.47896.1.A1_at11/115+24066128..24068334BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7817.1.A1_s_at--561--7571NONE
GGGCTCTCCTATAAATACTTCGGTG
NONE
Os.7817.1.A1_s_at--345--3851Chr05:24040308..24040332 (25 bp)
CTGAATCTTTCTGAGCTTACATGCA
LOC_Os05g41180
Os.7817.1.A1_s_at--391--1471Chr05:24039579..24039600 (22 bp)
AGAAGGTTCCAGACGACCTCGTGGA
LOC_Os05g41180
Os.7817.1.A1_s_at--774--10011Chr05:24039505..24039529 (25 bp)
TAGAAACCGCCGATCATGATGCTCT
LOC_Os05g41180
Os.7817.1.A1_s_at--792--10151Chr05:24039473..24039497 (25 bp)
TATCTCCATTACTCGATGCTAGACC
LOC_Os05g41180
Os.7817.1.A1_s_at--667--6331Chr05:24039459..24039483 (25 bp)
GATGCTAGACCGATCGATCATCTAT
LOC_Os05g41180
Os.7817.1.A1_s_at--274--7451Chr05:24039417..24039441 (25 bp)
GTGTAACAGACTTGAGGCAGCTCGT
LOC_Os05g41180
Os.7817.1.A1_s_at--345--931Chr05:24039403..24039427 (25 bp)
AGGCAGCTCGTCAGTTTCATTTCAA
LOC_Os05g41180
Os.7817.1.A1_s_at--694--8811Chr05:24039354..24039378 (25 bp)
TGTTGTACTATGCAGCTCGATCGCT
LOC_Os05g41180
Os.7817.1.A1_s_at--928--31Chr05:24039322..24039346 (25 bp)
ATTGTTTGCTCCTGATTTATGACGA
LOC_Os05g41180
Os.7817.1.A1_s_at--474--3631Chr05:24039288..24039312 (25 bp)
CTTGCTGTTTGCTCAACCTTTATAC
LOC_Os05g41180
Target Sequence 
GGGCTCTCCTATAAATACTTCGGTGCTGCCCTGGGGAAAGGAAGACAGGCTGCAAAAACGGAGATAGAGAAACTGAATCT
TTCTGAGCTTACATGCAGAGAAGGCATTGTTGAGGTTGCAAAGATAATCTATGGAGTGCATGACGAAGCTAAAGACAAAG
ACTTTGAACTGGAGCTGAGCTGGGTATGCGATGAATCAAAGCGCCAGCATGAGAAGGTTCCAGACGACCTCGTGGAGCAG
GCGAAGGCAGCCGCCCAGGCAGCGCTCGAGGAGATGGACGCAGACTAGAAACCGCCGATCATGATGCTCTAGAATCATAT
CTCCATTACTCGATGCTAGACCGATCGATCATCTATAACCATATCACTACATTGTGTAACAGACTTGAGGCAGCTCGTCA
GTTTCATTTCAACGTAGAACCACCTCAAGAAAAGAATGTTGTACTATGCAGCTCGATCGCTTTCACATATTGTTTGCTCC
TGATTTATGACGAACCACACTCCTTGCTGTTTGCTCAACCTTTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7817.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis