Browse Element(s) Details


Os.53510.1.S1_at

Description gb:AK073029.1
DB_XREF= gi:32983052
TID=Os.53510.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146M03, full insert sequence.
FL= gb:AK073029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4117211/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41130Os.27954.1.A1_at11/115+24006538..24008510F-box family protein, putative, expressed
LOC_Os05g41140OsAffx.4584.1.S1_at10/115+24010549..24012301hypothetical protein
LOC_Os05g41150Os.52892.1.S1_at11/115+24020523..24023345expressed protein
LOC_Os05g41160Os.52406.1.S1_at10/115+24024185..24026939expressed protein
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41172Os.53510.1.S1_at11/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.11922.1.S1_at6/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.52782.1.S1_at1/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41180Os.7817.1.A1_s_at10/115+24039254..24043454Proteasome subunit alpha type 3, putative, expressed
LOC_Os05g41190Os.27687.1.S1_at11/115+24043901..24045244expressed protein
LOC_Os05g41200Os.54462.1.S1_at11/115+24047031..24047769EF hand family protein, expressed
LOC_Os05g41210Os.10290.1.S1_at8/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41210Os.57504.1.S1_x_at1/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41220Os.15191.1.S1_s_at11/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41220Os.27951.1.S1_at1/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016571biological_processhistone methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0008168molecular_functionmethyltransferase activity
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53510.1.S1_at--524--7991Chr05:24036273..24036297 (25 bp)
GGATGTACATCACTGCCAATTAATA
LOC_Os05g41172
Os.53510.1.S1_at--1043--4951Chr05:24036234..24036258 (25 bp)
GCATATGTTCTATCTGGTACCAGTG
LOC_Os05g41172
Os.53510.1.S1_at--224--4051Chr05:24036158..24036182 (25 bp)
CGATCTTTTGAGTTGCATGCACTAG
LOC_Os05g41172
Os.53510.1.S1_at--34--1091Chr05:24036101..24036125 (25 bp)
AGGGCACCAGGCAATTTACTCTTTA
LOC_Os05g41172
Os.53510.1.S1_at--86--4211Chr05:24036065..24036089 (25 bp)
CCCCTCATGTCTAGATTCGAAATCA
LOC_Os05g41172
Os.53510.1.S1_at--336--2771Chr05:24036041..24036065 (25 bp)
AAGACCTTTGGCCTTGATACCATGC
LOC_Os05g41172
Os.53510.1.S1_at--582--1731Chr05:24036023..24036047 (25 bp)
ACCATGCTATGAATTGCGCTTGTAT
LOC_Os05g41172
Os.53510.1.S1_at--944--4571Chr05:24036008..24036032 (25 bp)
GCGCTTGTATTCATTACAGCCCAAT
LOC_Os05g41172
Os.53510.1.S1_at--144--331Chr05:24035895..24035919 (25 bp)
ATACAATCCAGGTGCCATAGACAAT
LOC_Os05g41172
Os.53510.1.S1_at--27--8211Chr05:24035868..24035892 (25 bp)
GGAATGACAGTCCAATTTAGCTCTT
LOC_Os05g41172
Os.53510.1.S1_at--645--4811Chr05:24035849..24035873 (25 bp)
GCTCTTGGGTAGGTGTATGCTATTT
LOC_Os05g41172
Target Sequence 
GGATGTACATCACTGCCAATTAATAAGATGGTACCATATGCATATGTTCTATCTGGTACCAGTGAAACTTTTTTAATGCT
TGAGGAAATGTTTCATCTCAACATGGGGGAAGGTCCGATCTTTTGAGTTGCATGCACTAGCTAGTTGAACTAAAAGCTTA
ATCTGATGGAGTAGGGCACCAGGCAATTTACTCTTTACTTCAACACTCCCCCTCATGTCTAGATTCGAAATCAAGACCTT
TGGCCTTGATACCATGCTATGAATTGCGCTTGTATTCATTACAGCCCAATGGTGCAGTATATATAAATATGGTGTATACA
CAATAAAACCCCTAATCCCCCAATACAAAGAGGAAAACACAAGTACTAATTATGTTAAATACAATCCAGGTGCCATAGAC
AATGGGGAATGACAGTCCAATTTAGCTCTTGGGTAGGTGTATGCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis