Browse Element(s) Details


Os.27954.1.A1_at

Description gb:AK071818.1
DB_XREF= gi:32981841
TID=Os.27954.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114L14, full insert sequence.
FL= gb:AK071818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4113011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41070Os.51688.1.S1_s_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41070Os.51688.1.S1_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41080Os.18405.1.S1_at10/115+23984503..23986986Histone H3, putative, expressed
LOC_Os05g41090Os.53033.1.S1_at11/115+23987984..23991882Calcium and calcium/calmodulin-dependent serine/threonine-proteinkinase, putative, expressed
LOC_Os05g41100Os.51939.1.S1_at11/115+23992386..23994674Krr1 family protein, expressed
LOC_Os05g41110Os.22564.1.S1_at11/115+23994851..2399676660S ribosomal protein L30, putative, expressed
LOC_Os05g41120Os.38127.1.S1_s_at11/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41120Os.38127.1.S1_at7/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41130Os.27954.1.A1_at11/115+24006538..24008510F-box family protein, putative, expressed
LOC_Os05g41140OsAffx.4584.1.S1_at10/115+24010549..24012301hypothetical protein
LOC_Os05g41150Os.52892.1.S1_at11/115+24020523..24023345expressed protein
LOC_Os05g41160Os.52406.1.S1_at10/115+24024185..24026939expressed protein
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41172Os.53510.1.S1_at11/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.11922.1.S1_at6/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.52782.1.S1_at1/115+24032417..24038459YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27954.1.A1_at--732--10851Chr05:24007112..24007136 (25 bp)
TTGGTACTGACCGATGCTGATGGCC
LOC_Os05g41130
Os.27954.1.A1_at--622--8451Chr05:24007092..24007116 (25 bp)
TGGCCAGGGCACATTGTCCATGGGA
LOC_Os05g41130
Os.27954.1.A1_at--427--1071Chr05:24007046..24007070 (25 bp)
AGGGAGAACCAGTTGTCGGCCTCAG
LOC_Os05g41130
Os.27954.1.A1_at--616--9451Chr05:24007031..24007055 (25 bp)
TCGGCCTCAGCATGTTCTAACAGGA
LOC_Os05g41130
Os.27954.1.A1_at--694--3731Chr05:24007015..24007039 (25 bp)
CTAACAGGACTCAGGTTCCAGCATG
LOC_Os05g41130
Os.27954.1.A1_at--188--5411Chr05:24006984..24007008 (25 bp)
GAAGCTCAAATACGCTCCATATCTT
LOC_Os05g41130
Os.27954.1.A1_at--783--9271Chr05:24006954..24006978 (25 bp)
TCCTGGCGGCATTGCGTTGCAAGGT
LOC_Os05g41130
Os.27954.1.A1_at--880--1031Chr05:24006933..24006957 (25 bp)
AGGTGCAACGTTGGTCGCTATCAAG
LOC_Os05g41130
Os.27954.1.A1_at--432--1931Chr05:24006863..24006887 (25 bp)
ACGGATGCATTTGTCTCCGGAGCAT
LOC_Os05g41130
Os.27954.1.A1_at--332--10451Chr05:24006602..24006626 (25 bp)
TTAGTGTATCTTTCTCATTGCTCTC
LOC_Os05g41130
Os.27954.1.A1_at--572--3771Chr05:24006582..24006606 (25 bp)
CTCTCCCAATGCCATGTCATGATTT
LOC_Os05g41130
Target Sequence 
TTGGTACTGACCGATGCTGATGGCCAGGGCACATTGTCCATGGGAGTGGAGCAGCTTAAGGAATTTAGGGAGAACCAGTT
GTCGGCCTCAGCATGTTCTAACAGGACTCAGGTTCCAGCATGCAACATGAAGCTCAAATACGCTCCATATCTTGAGCTTC
CTGGCGGCATTGCGTTGCAAGGTGCAACGTTGGTCGCTATCAAGCCCTCACCCGAGGGAAGCAATGGCGGTCATACTAGC
CGCAAGGAAACGGATGCATTTGTCTCCGGAGCATTTGATGGACCATTCAAGTTTGCTGTGAAGGCGCTGATGAAGAGGCG
AACTTACCTTCTGGAGATGAATGGCTTCTAAATATCTTGTGCTGTTACTGGGTACCTAGCTTGTTGGTCCAGGCAGTCAT
CTGGTTACTTTTAACTTCTGGTCTATGTAATAGGTTGTGCTTTGCTCTCTGTTGTATTAGCTCTCTGTACAGTGGTGACA
TTCTGTTGGTTATATGGAAATCATATCAAGTTAGTGTATCTTTCTCATTGCTCTCCCAATGCCATGTCATGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27954.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis