Browse Element(s) Details


Os.38127.1.S1_s_at

Description gb:AK101147.1
DB_XREF= gi:32986356
TID=Os.38127.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026P06, full insert sequence.
FL= gb:AK101147.1 gb:AK105601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4112011/11Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41060Os.10931.1.S1_at9/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41060Os.4733.1.S1_at1/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41070Os.51688.1.S1_s_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41070Os.51688.1.S1_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41080Os.18405.1.S1_at10/115+23984503..23986986Histone H3, putative, expressed
LOC_Os05g41090Os.53033.1.S1_at11/115+23987984..23991882Calcium and calcium/calmodulin-dependent serine/threonine-proteinkinase, putative, expressed
LOC_Os05g41100Os.51939.1.S1_at11/115+23992386..23994674Krr1 family protein, expressed
LOC_Os05g41110Os.22564.1.S1_at11/115+23994851..2399676660S ribosomal protein L30, putative, expressed
LOC_Os05g41120Os.38127.1.S1_s_at11/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41120Os.38127.1.S1_at7/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41130Os.27954.1.A1_at11/115+24006538..24008510F-box family protein, putative, expressed
LOC_Os05g41140OsAffx.4584.1.S1_at10/115+24010549..24012301hypothetical protein
LOC_Os05g41150Os.52892.1.S1_at11/115+24020523..24023345expressed protein
LOC_Os05g41160Os.52406.1.S1_at10/115+24024185..24026939expressed protein
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38127.1.S1_s_at--760--9271Chr05:24003216..24003240 (25 bp)
TCCGGCATCATTGACTCGTTCATAT
LOC_Os05g41120
Os.38127.1.S1_s_at--658--5711Chr05:24003228..24003252 (25 bp)
GACTCGTTCATATATCACGGGCAGA
LOC_Os05g41120
Os.38127.1.S1_s_at--225--10171Chr05:24003240..24003264 (25 bp)
TATCACGGGCAGAAGGCACTCAAGA
LOC_Os05g41120
Os.38127.1.S1_s_at--806--8071Chr05:24003272..24003296 (25 bp)
GGAGCTAGGCAAGTACAGATGATTT
LOC_Os05g41120
Os.38127.1.S1_s_at--1007--10451Chr05:24003295..24003319 (25 bp)
TTACCTGAAACATGGACTGGCCCTC
LOC_Os05g41120
Os.38127.1.S1_s_at--977--7971Chr05:24003356..24003380 (25 bp)
GGATCCATTGCTTAAGACCTGAAGA
LOC_Os05g41120
Os.38127.1.S1_s_at--154--5831Chr05:24003371..24003395 (25 bp)
GACCTGAAGACGTTGCTTTGCTGGA
LOC_Os05g41120
Os.38127.1.S1_s_at--623--8191Chr05:24003393..24003417 (25 bp)
GGAAGGTTTTGCTAAGGCCATCAGA
LOC_Os05g41120
Os.38127.1.S1_s_at--1010--5591Chr05:24003470..24003494 (25 bp)
GACAATATCATAGCGTTGGGCCTGG
LOC_Os05g41120
Os.38127.1.S1_s_at--609--6111Chr05:24003497..24003521 (25 bp)
GAGTGCTTTGATGTCTCAGTGAGAC
LOC_Os05g41120
Os.38127.1.S1_s_at--148--7371Chr05:24003515..24003539 (25 bp)
GTGAGACTCTTTTTGAGTGGCCAAA
LOC_Os05g41120
Target Sequence 
TCCGGCATCATTGACTCGTTCATATATCACGGGCAGAAGGCACTCAAGAAAAAAATGGAGCTAGGCAAGTACAGATGATT
TACCTGAAACATGGACTGGCCCTCATGTTCCCCAAGTTCCCAAGTTCCGTGGCTTGTAAAGGATCCATTGCTTAAGACCT
GAAGACGTTGCTTTGCTGGAAGGTTTTGCTAAGGCCATCAGAATTGACGATATTGCACATTAGTTGATCAAAAACTCGTT
TACATGTAAAAAAAGACAATATCATAGCGTTGGGCCTGGGGGAGTGCTTTGATGTCTCAGTGAGACTCTTTTTGAGTGGC
CAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38127.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis