Browse Element(s) Details


Os.52406.1.S1_at

Description gb:AK066923.1
DB_XREF= gi:32976941
TID=Os.52406.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089G08, full insert sequence.
FL= gb:AK066923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4116010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41120Os.38127.1.S1_s_at11/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41120Os.38127.1.S1_at7/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41130Os.27954.1.A1_at11/115+24006538..24008510F-box family protein, putative, expressed
LOC_Os05g41140OsAffx.4584.1.S1_at10/115+24010549..24012301hypothetical protein
LOC_Os05g41150Os.52892.1.S1_at11/115+24020523..24023345expressed protein
LOC_Os05g41160Os.52406.1.S1_at10/115+24024185..24026939expressed protein
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41172Os.53510.1.S1_at11/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.11922.1.S1_at6/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.52782.1.S1_at1/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41180Os.7817.1.A1_s_at10/115+24039254..24043454Proteasome subunit alpha type 3, putative, expressed
LOC_Os05g41190Os.27687.1.S1_at11/115+24043901..24045244expressed protein
LOC_Os05g41200Os.54462.1.S1_at11/115+24047031..24047769EF hand family protein, expressed
LOC_Os05g41210Os.10290.1.S1_at8/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41210Os.57504.1.S1_x_at1/115+24049234..24051689Calmodulin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52406.1.S1_at--357--1471Chr05:24025256..24025280 (25 bp)
AGAAGGATCTTCAGCGGTCCGCAGC
LOC_Os05g41160
Os.52406.1.S1_at--570--7251Chr05:24025240..24025264 (25 bp)
GTCCGCAGCTGTTCTGGGATATGCA
LOC_Os05g41160
Os.52406.1.S1_at--278--651NONE
ATGCAATTTTGCTCATAGCCTCCTA
NONE
Os.52406.1.S1_at--894--6451Chr05:24024784..24024808 (25 bp)
GATACCCTTTGCACTTTGGAGGATC
LOC_Os05g41160
Os.52406.1.S1_at--361--6111Chr05:24024747..24024771 (25 bp)
GAGTGATTGTTTGCCTTCAGCTGAA
LOC_Os05g41160
Os.52406.1.S1_at--714--631Chr05:24024683..24024707 (25 bp)
ATGACCGACCCAAAACTGACAGTTT
LOC_Os05g41160
Os.52406.1.S1_at--989--8271Chr05:24024618..24024642 (25 bp)
GGCATCCTATGCAATCTACTTGTTG
LOC_Os05g41160
Os.52406.1.S1_at--606--1371Chr05:24024436..24024460 (25 bp)
AGAGCTCTGGAAGGCGCGTATTTGA
LOC_Os05g41160
Os.52406.1.S1_at--949--10771Chr05:24024360..24024384 (25 bp)
TTGATCTATTCTGCGGTAACTGTAT
LOC_Os05g41160
Os.52406.1.S1_at--1013--6871Chr05:24024339..24024363 (25 bp)
GTATTCTTGGAGTCTTTGCGATGTA
LOC_Os05g41160
Os.52406.1.S1_at--500--10231Chr05:24024266..24024290 (25 bp)
TATTGTGATTCTTGCCTTCTTTCGG
LOC_Os05g41160
Target Sequence 
AGAAGGATCTTCAGCGGTCCGCAGCTGTTCTGGGATATGCAGCGCATGCAATTTTGCTCATAGCCTCCTATCTTCATGTT
CCCCTCCGATACCCTTTGCACTTTGGAGGATCGCGATCTTATGTGAGTGATTGTTTGCCTTCAGCTGAAACAGCATCCAT
TGCTTCAGCAGAGCGTACATGTATCAACATGACCGACCCAAAACTGACAGTTTACCCCCTTTTCGTGGAATGTCAAGAAG
ATGACCCCACTAAGGCATCCTATGCAATCTACTTGTTGCACAAGGATACAGAGCAGCTTTTGAACTACATTGGAGCTGAG
AGCTCTGGAAGGCGCGTATTTGATAATCTGCAAGAGCTTATTAGGATCATACAATCGGATGAGTATGTATACAGTTGATC
TATTCTGCGGTAACTGTATTCTTGGAGTCTTTGCGATGTAGAGATGGTGTTCATACACATGTAAAAATAGGGTTTCTTTG
TGTTCTTTTATTGTGATTCTTGCCTTCTTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis